Homologs in group_2778

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08105 FBDBKF_08105 87.1 Morganella morganii S1 - Uncharacterized radical SAM domain-containing protein
EHELCC_13935 EHELCC_13935 87.1 Morganella morganii S2 - Uncharacterized radical SAM domain-containing protein
NLDBIP_14380 NLDBIP_14380 87.1 Morganella morganii S4 - Uncharacterized radical SAM domain-containing protein
LHKJJB_08470 LHKJJB_08470 87.1 Morganella morganii S3 - Uncharacterized radical SAM domain-containing protein
HKOGLL_08020 HKOGLL_08020 87.1 Morganella morganii S5 - Uncharacterized radical SAM domain-containing protein

Distribution of the homologs in the orthogroup group_2778

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2778

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q60332 4.13e-14 77 29 11 243 3 MJ0021 Putative glycyl-radical enzyme activating enzyme MJ0021 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
B5YJ09 0.000216 47 28 9 182 3 moaA GTP 3',8-cyclase Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12895
Feature type CDS
Gene -
Product radical SAM protein
Location 184787 - 186136 (strand: -1)
Length 1350 (nucleotides) / 449 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2778
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF04055 Radical SAM superfamily
PF13353 4Fe-4S single cluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2108 Function unknown (S) S Uncharacterized radical SAM domain-containing protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07129 uncharacterized protein - -

Protein Sequence

MIYPLTEQCLSTYRNSTLQRYAQRYLDIEKQTQQAIAQYGLVFEAPHRRQAQIDLLRSEVKALGATFSNNGKSIHSKWLSGACVQCRTGEGSYTTFLSLKCHRDCYFCFNPNQENYDGFQHEMRDAIGEVNAIVEEGYPLSHIALTGGEPLLFRQESIRFFETVQEKLPGVHTRLYTAGDPLDRNTALALAAAGLKEVRFSIKIDDPPEKLEKVLSRIALAREIFPDVMVEMPVIPGSEEQMNELLLKLDAIGIDGINLLEFCFPLTNSPEYQTRGFALKNPPYEVYYNYWYAGGLAVADSELACLRVLKFALENNLSPGVHYCSLENKHTGQVYQSNAFLSAGPHYIFSPRDYFFKSAKVFGDDCSCVAAILREAGLPFHEDILHGFLQFNPESIMHLTHFPDLPVALTSHIAEDDGQGNPLIKEVRVEFTTPAEFSPDDIHGGVCEQ

Flanking regions ( +/- flanking 50bp)

CATCGTGACACCCGCCGACTGTCCCCGGCAATATACGTAAAGGAACAGCCATGATTTACCCGCTGACAGAACAATGCCTGAGCACTTATCGCAACAGCACATTGCAGCGCTATGCACAGCGCTATCTTGATATTGAAAAACAGACGCAGCAGGCGATCGCGCAGTATGGGCTGGTATTTGAAGCGCCACACCGGCGTCAGGCGCAGATTGATCTACTGCGAAGCGAGGTGAAGGCGCTGGGGGCAACATTTTCGAATAACGGCAAAAGTATTCACAGTAAATGGCTGTCCGGCGCCTGTGTGCAATGCCGCACGGGAGAGGGCAGCTATACCACGTTTTTATCGCTGAAATGCCACCGCGACTGCTATTTTTGCTTCAATCCGAACCAGGAAAATTACGATGGTTTTCAGCATGAAATGCGGGATGCTATTGGTGAAGTGAATGCGATTGTGGAAGAGGGCTATCCGCTGAGCCACATTGCACTGACCGGCGGCGAGCCGCTGTTGTTCCGTCAGGAAAGTATCCGTTTCTTTGAGACTGTACAGGAAAAACTGCCCGGCGTTCATACCAGACTCTATACCGCAGGAGATCCGCTGGATCGCAATACTGCGCTGGCACTGGCGGCAGCGGGTCTGAAAGAGGTGCGTTTCAGTATCAAAATTGACGATCCGCCGGAAAAACTGGAAAAAGTACTCAGCCGTATCGCACTGGCGCGGGAGATTTTCCCTGACGTCATGGTGGAGATGCCGGTTATCCCGGGCAGTGAAGAACAGATGAATGAACTGCTGCTGAAACTGGATGCTATCGGCATCGACGGTATTAATCTGCTGGAGTTTTGCTTTCCGCTGACCAACAGCCCTGAATATCAGACGCGGGGCTTTGCCCTGAAAAATCCGCCCTATGAGGTGTATTACAACTATTGGTACGCGGGCGGACTGGCGGTTGCCGACAGCGAACTTGCCTGTTTGCGGGTGCTGAAATTTGCCCTGGAAAATAATCTTTCCCCGGGTGTGCATTACTGCTCGCTGGAAAACAAACACACCGGGCAGGTGTATCAGAGCAATGCGTTTCTCAGCGCCGGTCCGCACTATATTTTTTCTCCGCGTGATTATTTCTTCAAAAGCGCCAAGGTGTTCGGTGACGATTGTTCATGTGTCGCTGCTATCCTGCGTGAGGCTGGTCTGCCGTTTCATGAAGATATTCTGCATGGTTTTTTACAATTCAATCCTGAATCGATTATGCACCTGACACATTTCCCCGATCTGCCCGTTGCGCTGACTTCCCATATTGCGGAAGACGACGGGCAGGGTAATCCGTTAATTAAAGAAGTGCGGGTGGAATTCACCACACCCGCTGAATTTTCGCCTGATGATATACACGGAGGTGTATGTGAGCAGTGACAGCCGGGAACTTGATTATCTGTATGCGCGTCAGTTTGCTTATGACGTAT