Homologs in group_1858

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13890 FBDBKF_13890 90.8 Morganella morganii S1 citE Citrate lyase beta subunit
EHELCC_11560 EHELCC_11560 90.8 Morganella morganii S2 citE Citrate lyase beta subunit
NLDBIP_11905 NLDBIP_11905 90.8 Morganella morganii S4 citE Citrate lyase beta subunit
LHKJJB_11765 LHKJJB_11765 90.8 Morganella morganii S3 citE Citrate lyase beta subunit
HKOGLL_10375 HKOGLL_10375 90.8 Morganella morganii S5 citE Citrate lyase beta subunit
PMI_RS11835 PMI_RS11835 72.5 Proteus mirabilis HI4320 - HpcH/HpaI aldolase/citrate lyase family protein

Distribution of the homologs in the orthogroup group_1858

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1858

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12755
Feature type CDS
Gene -
Product HpcH/HpaI aldolase/citrate lyase family protein
Location 150912 - 151859 (strand: 1)
Length 948 (nucleotides) / 315 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1858
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF15617 C-C_Bond_Lyase of the TIM-Barrel fold

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2301 Carbohydrate transport and metabolism (G) G Citrate lyase beta subunit

Protein Sequence

MTQRLSPWNLGASLYMPATRTDIADATINNKISGLRSLIICLEDAVSEADIPQALRNLHDILTTLTAEKQRTGNQSWPLVFIRPRHPEMGLWLRDNCDLSAIDGLVLPKFTQATLPVWWQVVKNSPLCMMPTLETEEVYDVVQMRELAQVLQSHPCHERIIALRIGGNDLMNVISLRRSRHLTLYDGPMGYVIKMLVAVFASRDFAMTAPVCEHIDDHDVMTRELALDIAHGLVGKTAIHPNQVAVIEQALRVSADEHADALRILNSTQAVFKSQGAMCEPATHRRWASSILARARVYGISQRKTDGMPFKTQNG

Flanking regions ( +/- flanking 50bp)

GATGCCCTGGGGCAATACCGCGCCGTTACTATTATCAAAAAGGTATCACCATGACACAGCGTCTCTCTCCCTGGAATTTAGGGGCGTCACTCTATATGCCTGCAACACGCACAGATATTGCTGACGCTACCATAAACAATAAAATCAGCGGATTGCGCTCTCTTATCATCTGCCTGGAAGATGCCGTCAGCGAAGCCGATATTCCGCAGGCGCTGCGCAATCTGCATGATATTTTAACGACACTGACCGCAGAAAAGCAGCGCACCGGTAATCAGAGCTGGCCACTGGTGTTTATCCGCCCGCGTCACCCGGAAATGGGGCTGTGGCTGCGCGACAACTGTGACCTCAGTGCAATCGACGGGCTGGTACTGCCGAAATTCACACAGGCGACATTACCTGTCTGGTGGCAGGTGGTTAAAAACAGCCCGCTGTGCATGATGCCGACCCTGGAAACAGAAGAAGTTTATGATGTGGTGCAGATGCGCGAACTGGCACAGGTACTGCAATCACATCCCTGCCATGAGCGGATTATCGCCCTGCGTATCGGCGGTAACGACCTGATGAATGTCATTTCACTGCGCCGCTCCCGGCATCTGACGCTGTATGACGGACCTATGGGATACGTCATTAAAATGCTGGTCGCCGTGTTTGCTTCGCGTGACTTTGCCATGACCGCACCGGTATGTGAGCACATTGATGATCACGATGTTATGACCCGGGAACTGGCGCTGGATATCGCTCACGGGCTGGTCGGCAAAACAGCTATTCATCCGAATCAGGTTGCGGTAATTGAACAGGCGCTGCGGGTTTCAGCCGATGAACACGCAGACGCCCTGCGCATCCTGAATTCCACTCAGGCAGTATTTAAATCCCAGGGTGCCATGTGTGAACCGGCAACACACCGCCGCTGGGCATCCTCAATACTGGCACGGGCGCGGGTTTACGGTATTTCACAACGAAAAACGGACGGAATGCCGTTTAAAACACAGAATGGCTGAGTGCAGCCGACGAACCCGCAGTAAGAATGAATAAGAGTATATACCCAACG