COG2301


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2301, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Citrate lyase beta subunit
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG2301 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1858 FBDBKF_13890 72266 73213 1 citE Citrate lyase beta subunit Morganella morganii S1
1 group_1858 EHELCC_11560 157142 158089 1 citE Citrate lyase beta subunit Morganella morganii S2
2 group_1858 NLDBIP_11905 157142 158089 1 citE Citrate lyase beta subunit Morganella morganii S4
3 group_1858 LHKJJB_11765 157142 158089 1 citE Citrate lyase beta subunit Morganella morganii S3
4 group_1858 HKOGLL_10375 157142 158089 1 citE Citrate lyase beta subunit Morganella morganii S5
5 group_1858 F4V73_RS12755 150912 151859 1 HpcH/HpaI aldolase/citrate lyase family protein Morganella psychrotolerans
6 group_4296 PMI_RS01120 274538 275374 -1 CoA ester lyase Proteus mirabilis HI4320
7 group_1858 PMI_RS11835 2615693 2616637 1 HpcH/HpaI aldolase/citrate lyase family protein Proteus mirabilis HI4320