Homologs in group_1845

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13795 FBDBKF_13795 84.0 Morganella morganii S1 ycaP DUF421 domain-containing protein
EHELCC_11465 EHELCC_11465 84.0 Morganella morganii S2 ycaP DUF421 domain-containing protein
NLDBIP_11810 NLDBIP_11810 84.0 Morganella morganii S4 ycaP DUF421 domain-containing protein
LHKJJB_11670 LHKJJB_11670 84.0 Morganella morganii S3 ycaP DUF421 domain-containing protein
HKOGLL_10280 HKOGLL_10280 84.0 Morganella morganii S5 ycaP DUF421 domain-containing protein
PMI_RS01220 PMI_RS01220 67.4 Proteus mirabilis HI4320 - DUF421 domain-containing protein

Distribution of the homologs in the orthogroup group_1845

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1845

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O31533 1.67e-25 102 30 4 217 1 yetF UPF0702 transmembrane protein YetF Bacillus subtilis (strain 168)
P96697 8.03e-18 82 28 3 221 3 ydfS UPF0702 transmembrane protein YdfS Bacillus subtilis (strain 168)
O32050 1.18e-12 67 24 3 223 3 yrbG UPF0702 transmembrane protein YrbG Bacillus subtilis (strain 168)
P75839 4.13e-06 49 20 2 164 3 ycaP UPF0702 transmembrane protein YcaP Escherichia coli (strain K12)
P49853 4.33e-05 46 23 3 154 3 ykjA UPF0702 transmembrane protein YkjA Bacillus subtilis (strain 168)
P96696 7.7e-05 45 27 2 125 3 ydfR UPF0702 transmembrane protein YdfR Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12665
Feature type CDS
Gene -
Product DUF421 domain-containing protein
Location 130910 - 131587 (strand: -1)
Length 678 (nucleotides) / 225 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1845
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04239 YetF C-terminal domain
PF20730 YetF N-terminal transmembrane domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2323 Function unknown (S) S Uncharacterized membrane protein YcaP, DUF421 family

Protein Sequence

MTYYLFVIVKFIIGFVIVITHMNISGKTQLSQMTPVDFIGNFVLGGIIGGVIYSDSIPLTQYVILLLIGVSFISAVNWVSKHINFFRSVAIGNPIPIIKNGLFIMDSIHEKRNKIDILNIASRMHSQGIYSFSDVYYAQIEPDGQLTVICDKKQMPSVIIMKDGVPRKNELEQIGYDEAWLESGLKKLGVDNPEEVFLAEFYDGNINVVMKDGRMTGHHSEPLQP

Flanking regions ( +/- flanking 50bp)

TTTTTATTTCAATTGATTATGTCGAATTACGCAGTGATTAAGGAAAATCCATGACATATTATCTGTTTGTTATTGTGAAGTTTATCATTGGTTTTGTTATTGTGATTACGCACATGAATATTTCCGGAAAAACACAGTTATCACAAATGACACCGGTTGATTTTATTGGTAACTTTGTCCTTGGCGGTATTATCGGCGGTGTGATATACAGCGACAGCATTCCATTAACACAATATGTTATTTTATTGCTGATTGGCGTTAGTTTTATCAGTGCGGTCAATTGGGTTAGCAAGCATATTAATTTTTTTCGTTCTGTTGCGATAGGTAACCCGATACCCATTATAAAAAACGGGTTATTTATCATGGATAGCATCCATGAAAAACGAAATAAAATTGATATCCTGAATATTGCATCAAGGATGCATTCTCAGGGAATTTATTCGTTCAGTGACGTTTATTATGCGCAGATAGAGCCTGATGGTCAGTTGACGGTGATTTGTGATAAAAAACAGATGCCTTCTGTGATTATTATGAAAGATGGCGTACCGCGTAAAAACGAGCTGGAACAGATTGGATATGATGAAGCCTGGCTGGAGAGCGGGCTGAAAAAGCTTGGCGTCGACAATCCCGAAGAGGTGTTTCTTGCTGAATTTTATGACGGCAATATTAATGTGGTCATGAAAGACGGGCGCATGACCGGGCATCACAGTGAGCCGTTACAGCCGTAAGGGGAGAGCCCCTTACGTCACGATCACCACTTTTTCGGGGTAGATATCCC