Homologs in group_1883

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13795 FBDBKF_13795 100.0 Morganella morganii S1 ycaP DUF421 domain-containing protein
NLDBIP_11810 NLDBIP_11810 100.0 Morganella morganii S4 ycaP DUF421 domain-containing protein
LHKJJB_11670 LHKJJB_11670 100.0 Morganella morganii S3 ycaP DUF421 domain-containing protein
HKOGLL_10280 HKOGLL_10280 100.0 Morganella morganii S5 ycaP DUF421 domain-containing protein
F4V73_RS12665 F4V73_RS12665 84.0 Morganella psychrotolerans - DUF421 domain-containing protein
PMI_RS01220 PMI_RS01220 66.1 Proteus mirabilis HI4320 - DUF421 domain-containing protein

Distribution of the homologs in the orthogroup group_1883

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1883

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O31533 9.72e-27 105 30 3 220 1 yetF UPF0702 transmembrane protein YetF Bacillus subtilis (strain 168)
P96697 3.75e-19 85 28 2 220 3 ydfS UPF0702 transmembrane protein YdfS Bacillus subtilis (strain 168)
O32050 1.3e-11 65 22 3 223 3 yrbG UPF0702 transmembrane protein YrbG Bacillus subtilis (strain 168)
P49853 2.62e-08 56 22 6 203 3 ykjA UPF0702 transmembrane protein YkjA Bacillus subtilis (strain 168)
P75839 2.47e-06 50 18 2 167 3 ycaP UPF0702 transmembrane protein YcaP Escherichia coli (strain K12)
P96696 0.000633 43 25 4 148 3 ydfR UPF0702 transmembrane protein YdfR Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_11465
Feature type CDS
Gene ycaP
Product DUF421 domain-containing protein
Location 137508 - 138185 (strand: -1)
Length 678 (nucleotides) / 225 (amino acids)
In genomic island -

Contig

Accession ZDB_220
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1883
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04239 YetF C-terminal domain
PF20730 YetF N-terminal transmembrane domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2323 Function unknown (S) S Uncharacterized membrane protein YcaP, DUF421 family

Protein Sequence

MTYYLLVIVKFIIGFVIVLTHMNISGKTQLSQMTPVDFIGNFVLGGIIGGVIYSDTIPLTQYIIILLMGVSFISIINWVSKHISVLRAVTIGNPIPIIKNGVFIMDSIHEKRNKIDILNITSRMHAQGIYSYRDVYYAQIEPDGQLTVICDQSQMPSVIVMKDGVPRKHELEQIGHDEAWLAERLKQQGIDDPESVFLAEFYNGSLNVVMKDGRMTGHHSEPSQL

Flanking regions ( +/- flanking 50bp)

CATGTTTTATTTCAGTTGGTTAGCGTTGTTTGTCAGTGTAAGGAAATACCATGACATATTATCTGCTGGTTATCGTTAAATTTATCATCGGCTTTGTTATTGTGTTAACGCACATGAATATCTCCGGGAAAACCCAATTATCACAAATGACACCGGTTGATTTTATTGGAAACTTTGTACTGGGCGGCATTATCGGCGGTGTTATTTACAGTGATACCATTCCGCTGACGCAATATATTATTATTCTGCTGATGGGGGTGAGTTTTATCAGCATAATCAATTGGGTCAGCAAACATATCAGTGTACTGCGCGCGGTGACTATCGGTAACCCGATCCCCATTATTAAAAACGGGGTATTTATCATGGATAGCATTCATGAGAAGCGCAATAAGATCGATATTCTGAATATCACCTCCCGCATGCATGCACAGGGGATCTATTCATACCGCGATGTGTATTATGCGCAGATAGAGCCGGACGGCCAGCTGACGGTGATTTGTGACCAGTCACAGATGCCGTCAGTTATTGTGATGAAAGACGGCGTGCCGCGCAAACATGAGCTGGAGCAGATTGGTCATGATGAGGCGTGGCTGGCAGAGCGCCTGAAACAGCAGGGAATTGACGACCCTGAGAGCGTTTTCCTGGCGGAATTTTATAACGGCAGCCTCAATGTGGTGATGAAGGACGGGCGGATGACCGGCCATCACAGCGAGCCGTCACAGCTGTAAGGTTTTTTCCCTTATGGCACGATAACGACTTTTTCCGGATATTTTTCACG