Homologs in group_1842

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13750 FBDBKF_13750 74.9 Morganella morganii S1 - Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
EHELCC_11420 EHELCC_11420 74.9 Morganella morganii S2 - Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
NLDBIP_11765 NLDBIP_11765 74.9 Morganella morganii S4 - Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
LHKJJB_11625 LHKJJB_11625 74.9 Morganella morganii S3 - Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
HKOGLL_10235 HKOGLL_10235 74.9 Morganella morganii S5 - Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
PMI_RS07460 PMI_RS07460 44.8 Proteus mirabilis HI4320 - YiiX/YebB-like N1pC/P60 family cysteine hydrolase

Distribution of the homologs in the orthogroup group_1842

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1842

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P32167 0.000684 42 24 4 129 3 yiiX Uncharacterized protein YiiX Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12620
Feature type CDS
Gene -
Product YiiX/YebB-like N1pC/P60 family cysteine hydrolase
Location 120278 - 120841 (strand: 1)
Length 564 (nucleotides) / 187 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1842
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3863 Function unknown (S) S Uncharacterized conserved protein YycO, NlpC/P60 family

Protein Sequence

MIPRISAGSLLPVLFFISLSLSASPLPPGIQSGDLIFRDGGEAISDIVRTVDNSGFSHVGMLDIAPDGVYVIHATPQEHPGGIAGVNRDTLDFFILHAKNGQVSYYAVQADDAHHRLARDNALSQTGTPFSINPQEGLYCTQLVAQAWQSAGLTIINGKTRLSLPMVEEPLILPENLTRSPLLRRIP

Flanking regions ( +/- flanking 50bp)

CGCTTCCTGCTCACTCAGGAAAACGACGACTGGAAAGTTATTCTGCGCTGATGATCCCCCGTATATCCGCCGGGAGCCTGCTCCCGGTCCTGTTTTTTATCTCATTGTCACTCAGCGCATCCCCTCTGCCGCCCGGCATTCAGAGCGGCGACCTTATCTTCCGTGATGGCGGTGAAGCCATCAGTGACATTGTCAGAACCGTGGATAACAGCGGGTTCAGCCACGTCGGTATGCTTGATATTGCCCCGGACGGCGTTTATGTTATTCATGCCACGCCACAGGAGCACCCGGGCGGAATAGCCGGTGTTAACCGGGATACTCTGGATTTTTTTATCCTTCATGCCAAAAACGGGCAGGTCAGTTATTACGCCGTACAGGCAGATGACGCTCATCACCGGCTCGCCCGTGACAATGCCTTGTCACAAACCGGCACACCTTTCAGTATCAATCCGCAGGAAGGGCTTTATTGTACCCAACTGGTGGCACAGGCCTGGCAGTCCGCCGGGCTGACAATTATTAACGGTAAAACCCGTCTGAGTTTACCGATGGTCGAAGAACCGCTAATCTTACCGGAAAATCTTACCCGCTCGCCGCTGCTCCGTCGTATTCCGTGAGTCTCCGCCTGCGGGCAGCAAAATCGTAATACGGGGAACAATATGGAGTT