Homologs in group_3700

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2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12480 FBDBKF_12480 79.2 Morganella morganii S1 cspC Cold shock protein, CspA family
PMI_RS14755 PMI_RS14755 73.4 Proteus mirabilis HI4320 - cold shock domain-containing protein

Distribution of the homologs in the orthogroup group_3700

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3700

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A105 0.00052 40 37 3 64 3 capB Cold shock protein CapB Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
P0A106 0.00052 40 37 3 64 1 capB Cold shock protein CapB Pseudomonas fragi

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12560
Feature type CDS
Gene -
Product cold shock domain-containing protein
Location 106027 - 106509 (strand: -1)
Length 483 (nucleotides) / 160 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3700
Orthogroup size 3
N. genomes 3

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Genomic region

Domains

PF00313 'Cold-shock' DNA-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1278 Transcription (K) K Cold shock protein, CspA family

Protein Sequence

MAMNGTITTWFEDKGFGFIKDENGDNRYFHEVKVANPELIKKDAAVTFEPTTNNKGLSAYSVKVIPESKYIYIAGERIKLTSIKSYLIYSEEVPVDSTIDKEKTVLSVGVLMSSIRPKLTSAPDEMRTLKKLAITTFQGTTLIFSEDEIDVDATVKLLGV

Flanking regions ( +/- flanking 50bp)

TTATACTGCGCGCTGCAAAAACTGAGCATATAAATGATTAAGCAGGGGTAATGGCGATGAACGGAACGATCACAACGTGGTTTGAAGATAAAGGTTTTGGGTTTATCAAAGATGAAAATGGTGATAACCGTTATTTTCATGAGGTTAAGGTCGCCAACCCTGAGCTGATAAAAAAAGATGCGGCAGTGACTTTTGAACCCACGACAAATAACAAAGGTTTATCCGCCTATTCTGTAAAAGTTATACCGGAAAGCAAATATATCTATATTGCGGGCGAACGCATTAAACTTACGTCGATCAAATCCTACCTGATTTACAGTGAAGAAGTGCCGGTTGACTCCACAATTGATAAAGAGAAAACCGTGCTGTCAGTCGGTGTACTGATGAGCAGCATCAGACCTAAATTGACCAGCGCACCAGATGAAATGCGCACGCTGAAAAAACTGGCGATCACCACCTTCCAGGGAACAACACTGATCTTTTCGGAAGATGAAATAGATGTGGATGCCACGGTAAAACTGCTCGGCGTCTGACATAATCCGGGGCTCGCTGACTGCAAATTGCCGGCAAGAGAAAACGCTTA