Homologs in group_2013

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15125 FBDBKF_15125 79.1 Morganella morganii S1 yafK Murein L,D-transpeptidase YafK
EHELCC_11120 EHELCC_11120 79.1 Morganella morganii S2 yafK Murein L,D-transpeptidase YafK
NLDBIP_11465 NLDBIP_11465 79.1 Morganella morganii S4 yafK Murein L,D-transpeptidase YafK
LHKJJB_11325 LHKJJB_11325 79.1 Morganella morganii S3 yafK Murein L,D-transpeptidase YafK
HKOGLL_09935 HKOGLL_09935 79.1 Morganella morganii S5 yafK Murein L,D-transpeptidase YafK
PMI_RS01680 PMI_RS01680 54.3 Proteus mirabilis HI4320 - murein L,D-transpeptidase family protein

Distribution of the homologs in the orthogroup group_2013

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2013

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AA99 4.41e-77 235 52 2 210 1 yafK Putative L,D-transpeptidase YafK Escherichia coli (strain K12)
P0AAA0 4.41e-77 235 52 2 210 3 yafK Putative L,D-transpeptidase YafK Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12320
Feature type CDS
Gene -
Product murein L,D-transpeptidase family protein
Location 48327 - 49034 (strand: 1)
Length 708 (nucleotides) / 235 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2013
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03734 L,D-transpeptidase catalytic domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3034 Cell wall/membrane/envelope biogenesis (M) M Murein L,D-transpeptidase YafK

Protein Sequence

MSGLLFFVGLSSVTRAETPSLWLTPQVSDVRNNPVFIQIFKEEKELELYHRESNGRFRLVKRYPVCQFSGGLGPKQLTGDLKSPEGFYRVTPAQLNPNSRFYRAINLGFPNEFDQAHGYTGDYLMIHGDCKSVGCYAMTDAYIGEIYRYVENALQGGQTDLNIAIYPFRMNQENMNRHRNSSHMAFWQQLQPAYQYFTDNRIPAIVSVINGRYVVNAHSAAPASVTETLLTRSSE

Flanking regions ( +/- flanking 50bp)

CCAACTTATCCGTATCCTGAATGCAGACAATAAGACATATCATTTTCATAATGTCCGGCCTTCTGTTTTTCGTTGGTCTGTCATCAGTAACCCGGGCTGAAACCCCGTCATTATGGCTCACACCTCAGGTAAGTGATGTCCGTAATAACCCTGTATTTATACAGATATTCAAAGAAGAAAAAGAGCTGGAATTGTATCACCGCGAAAGTAACGGACGTTTCAGATTGGTCAAACGTTATCCTGTTTGTCAGTTTTCCGGTGGTCTGGGTCCGAAACAGTTAACCGGTGATTTAAAAAGCCCGGAAGGGTTTTATCGTGTAACACCGGCACAATTAAACCCGAACAGTCGGTTTTATCGAGCTATCAACCTTGGTTTTCCCAATGAATTTGACCAGGCACATGGCTATACCGGTGATTATCTGATGATCCACGGAGACTGCAAATCGGTAGGTTGCTACGCGATGACAGATGCTTATATAGGGGAGATTTACCGCTATGTGGAAAATGCATTGCAGGGCGGTCAGACAGACCTGAATATTGCGATTTATCCGTTCCGGATGAATCAGGAGAATATGAACCGCCACCGGAATTCATCGCATATGGCATTCTGGCAACAATTACAGCCGGCGTATCAATATTTTACCGATAATCGGATCCCTGCGATTGTCTCTGTTATCAACGGACGCTATGTTGTGAATGCTCACTCCGCAGCACCCGCCTCAGTCACAGAGACATTACTTACCCGCAGCTCAGAGTAAGGAATCAATCCGCTCGCCGTAATGAAAAAGAACCGCTTCACCCCCGTTAA