Homologs in group_2016

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15140 FBDBKF_15140 93.9 Morganella morganii S1 nqrC Na(+)-translocating NADH-quinone reductase subunit C
EHELCC_11105 EHELCC_11105 93.9 Morganella morganii S2 nqrC Na(+)-translocating NADH-quinone reductase subunit C
NLDBIP_11450 NLDBIP_11450 93.9 Morganella morganii S4 nqrC Na(+)-translocating NADH-quinone reductase subunit C
LHKJJB_11310 LHKJJB_11310 93.9 Morganella morganii S3 nqrC Na(+)-translocating NADH-quinone reductase subunit C
HKOGLL_09920 HKOGLL_09920 93.9 Morganella morganii S5 nqrC Na(+)-translocating NADH-quinone reductase subunit C
PMI_RS01695 PMI_RS01695 74.3 Proteus mirabilis HI4320 - Na(+)-translocating NADH-quinone reductase subunit C

Distribution of the homologs in the orthogroup group_2016

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2016

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZBZ2 2.39e-107 314 58 2 266 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Yersinia pestis
Q56582 3.05e-94 280 53 4 257 1 nqrC Na(+)-translocating NADH-quinone reductase subunit C Vibrio alginolyticus
P0C6E0 3.45e-90 270 52 4 257 1 nqrC Na(+)-translocating NADH-quinone reductase subunit C Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F5Y7 3.45e-90 270 52 4 257 1 nqrC Na(+)-translocating NADH-quinone reductase subunit C Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q9CLA9 4.25e-90 270 50 0 258 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Pasteurella multocida (strain Pm70)
Q75R62 1.07e-88 266 50 4 257 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Vibrio anguillarum
Q87MA8 3.94e-88 265 50 4 262 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q7MIC9 1.81e-87 263 51 4 257 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Vibrio vulnificus (strain YJ016)
Q8DBJ4 1.81e-87 263 51 4 257 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Vibrio vulnificus (strain CMCP6)
Q9RFV9 2.62e-85 258 49 4 262 1 nqrC Na(+)-translocating NADH-quinone reductase subunit C Vibrio campbellii (strain ATCC BAA-1116)
Q7VNU7 3.83e-84 255 49 1 253 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Haemophilus ducreyi (strain 35000HP / ATCC 700724)
P43957 2.71e-80 244 49 2 253 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9JVQ0 5.06e-72 224 44 2 254 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q9K0M5 8.92e-71 221 43 2 254 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9HZK8 7.91e-67 211 45 4 259 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O84281 1.95e-25 105 29 9 281 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9PKB5 3.49e-21 94 29 9 235 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Chlamydia muridarum (strain MoPn / Nigg)
Q823P3 7.56e-21 92 31 7 222 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Chlamydia caviae (strain ATCC VR-813 / DSM 19441 / 03DC25 / GPIC)
Q9Z8B5 8.27e-18 84 36 3 125 3 nqrC Na(+)-translocating NADH-quinone reductase subunit C Chlamydia pneumoniae

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12305
Feature type CDS
Gene -
Product Na(+)-translocating NADH-quinone reductase subunit C
Location 44522 - 45316 (strand: -1)
Length 795 (nucleotides) / 264 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2016
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04205 FMN-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2869 Energy production and conversion (C) C Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00348 Na+-transporting NADH:ubiquinone oxidoreductase subunit C [EC:7.2.1.1] - -

Protein Sequence

MANEKTKNKDSVARTFIVVFVLCLVCSVIVAGSAVGLKSTQQTQIMLDKQRNILDVAGLLTPSMPADEIDAVYKKFIKVKLVDLKTGQMTDSRGKYDLNDELRSDETSIALSPEEDLAKIRRRAISAEIYLVQNDKGETSKIVLPVYGSGLWSVMYAFIAIDVDGITSEGISYYQHGETPGLGGEVDNLQWRKQWIGKKLFNEKGLPAIKIVRSGSTDSPYGIDGLSGATLTSNGIQHMFDFWLGDNGFGPFLKTVREGALNHG

Flanking regions ( +/- flanking 50bp)

GTTATTTGATTATCTGGTTGTTCAGGCAAATATTAAGCGGAGAAAAGCGCGTGGCTAATGAAAAAACGAAAAACAAGGACAGTGTCGCAAGAACGTTTATCGTTGTCTTCGTCCTTTGCCTTGTGTGTTCAGTCATCGTGGCGGGTTCTGCCGTGGGTCTGAAATCCACACAACAGACACAGATTATGCTGGATAAACAGCGCAATATCCTGGATGTCGCCGGGTTACTTACGCCGTCAATGCCGGCAGATGAAATTGATGCTGTCTACAAAAAATTCATCAAAGTTAAATTGGTGGATTTAAAAACCGGTCAGATGACTGACAGCCGTGGTAAATACGATCTTAATGACGAGTTGCGCAGCGACGAAACCAGTATCGCATTATCACCGGAAGAAGATTTGGCGAAAATCCGCCGCCGGGCGATCAGCGCGGAGATTTACCTGGTGCAGAACGACAAAGGCGAAACCAGCAAAATTGTTTTGCCGGTATATGGCTCCGGTCTGTGGTCTGTGATGTATGCCTTTATCGCGATTGACGTGGATGGGATTACCTCTGAGGGGATCTCTTACTATCAGCACGGTGAAACACCGGGGCTGGGCGGTGAGGTGGATAATCTGCAGTGGCGTAAACAATGGATTGGTAAAAAACTGTTTAATGAGAAAGGGTTGCCGGCGATTAAAATTGTCCGCAGTGGCTCCACTGACAGCCCGTACGGGATTGATGGCTTATCCGGCGCGACACTGACCTCAAACGGTATCCAGCACATGTTTGACTTCTGGCTGGGTGATAACGGTTTTGGCCCGTTCCTGAAAACAGTACGCGAAGGAGCGTTAAATCATGGCTGACAGTAAAGAAATTAAACGCGTTCTTCTCGGACCGTTATTTGATAACAACC