Homologs in group_2608

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03480 FBDBKF_03480 93.8 Morganella morganii S1 livK ABC-type branched-chain amino acid transport system, periplasmic component
EHELCC_07055 EHELCC_07055 93.8 Morganella morganii S2 livK ABC-type branched-chain amino acid transport system, periplasmic component
NLDBIP_07380 NLDBIP_07380 93.8 Morganella morganii S4 livK ABC-type branched-chain amino acid transport system, periplasmic component
LHKJJB_06915 LHKJJB_06915 93.8 Morganella morganii S3 livK ABC-type branched-chain amino acid transport system, periplasmic component
HKOGLL_04015 HKOGLL_04015 93.8 Morganella morganii S5 livK ABC-type branched-chain amino acid transport system, periplasmic component

Distribution of the homologs in the orthogroup group_2608

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2608

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1W6 0.0 564 72 1 367 1 livK Leucine-specific-binding protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1W7 0.0 564 72 1 367 3 livK Leucine-specific-binding protein Salmonella typhi
P04816 0.0 561 71 1 367 1 livK Leucine-specific-binding protein Escherichia coli (strain K12)
P25399 0.0 555 71 2 367 3 livJ Leu/Ile/Val-binding protein Citrobacter freundii
P0AD96 0.0 553 72 2 367 1 livJ Leu/Ile/Val-binding protein Escherichia coli (strain K12)
P0AD97 0.0 553 72 2 367 3 livJ Leu/Ile/Val-binding protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AD98 0.0 553 72 2 367 3 livJ Leu/Ile/Val-binding protein Escherichia coli O157:H7
P17215 0.0 549 71 1 359 1 livJ Leu/Ile/Val/Thr-binding protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P21175 7.43e-150 430 55 0 365 1 braC Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HUQ0 6.58e-99 301 43 5 374 1 PA4913 Amino acid binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8YEE8 2.77e-89 276 40 5 364 1 BMEI1930 Leu/Ile/Val-binding protein homolog 3 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8G3D4 4.32e-89 275 40 5 364 3 BR0014 Leu/Ile/Val-binding protein homolog 3 Brucella suis biovar 1 (strain 1330)
Q1MDE9 2.38e-85 266 40 4 359 1 braC3 Leu/Ile/Val-binding protein BraC3 Rhizobium johnstonii (strain DSM 114642 / LMG 32736 / 3841)
Q57B99 8.45e-85 265 40 4 363 3 BruAb1_1767 Leu/Ile/Val-binding protein homolog 1 Brucella abortus biovar 1 (strain 9-941)
Q2YLF8 8.45e-85 265 40 4 363 3 BAB1_1794 Leu/Ile/Val-binding protein homolog 1 Brucella abortus (strain 2308)
Q8YJ23 1.39e-84 264 42 6 366 3 BMEI0263 Leu/Ile/Val-binding protein homolog 1 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8FYS6 2.31e-84 263 42 6 366 3 BR1785 Leu/Ile/Val-binding protein homolog 1 Brucella suis biovar 1 (strain 1330)
Q8FYS9 3.77e-81 255 40 4 362 3 BR1782 Leu/Ile/Val-binding protein homolog 2 Brucella suis biovar 1 (strain 1330)
Q57BA1 1.41e-80 254 41 5 365 3 BruAb1_1765 Leu/Ile/Val-binding protein homolog 2 Brucella abortus biovar 1 (strain 9-941)
Q2YLG0 1.41e-80 254 41 5 365 3 BAB1_1792 Leu/Ile/Val-binding protein homolog 2 Brucella abortus (strain 2308)
Q8YJ22 6.45e-80 252 39 4 362 3 BMEI0264 Leu/Ile/Val-binding protein homolog 2 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q577J0 2.33e-17 86 29 3 225 3 BruAb2_0801 Leu/Ile/Val-binding protein homolog 7 Brucella abortus biovar 1 (strain 9-941)
Q2YK58 2.33e-17 86 29 3 225 3 BAB2_0822 Leu/Ile/Val-binding protein homolog 7 Brucella abortus (strain 2308)
Q577I2 3.08e-17 85 26 4 250 3 BruAb2_0809 Leu/Ile/Val-binding protein homolog 8 Brucella abortus biovar 1 (strain 9-941)
Q2YK50 3.08e-17 85 26 4 250 3 BAB2_0830 Leu/Ile/Val-binding protein homolog 8 Brucella abortus (strain 2308)
Q8FWP6 3.24e-17 85 29 3 225 3 BRA0400 Leu/Ile/Val-binding protein homolog 7 Brucella suis biovar 1 (strain 1330)
Q8YBN1 3.27e-17 85 29 3 225 3 BMEII0868 Leu/Ile/Val-binding protein homolog 7 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8YBM4 3.29e-17 85 26 4 250 3 BMEII0875 Leu/Ile/Val-binding protein homolog 8 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8FWQ3 1.48e-16 84 26 4 250 3 BRA0392 Leu/Ile/Val-binding protein homolog 8 Brucella suis biovar 1 (strain 1330)
Q8YDS2 4.24e-10 64 23 5 242 3 BMEII0103 Leu/Ile/Val-binding protein homolog 5 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q576D4 4.24e-10 64 23 5 242 3 BruAb2_1129 Leu/Ile/Val-binding protein homolog 5 Brucella abortus biovar 1 (strain 9-941)
Q2YJA9 4.24e-10 64 23 5 242 3 BAB2_1153 Leu/Ile/Val-binding protein homolog 5 Brucella abortus (strain 2308)
Q8FUM7 4.99e-10 64 23 5 242 3 BRA1193 Leu/Ile/Val-binding protein homolog 5 Brucella suis biovar 1 (strain 1330)
Q8FXP1 1.72e-08 59 25 8 268 3 BRA0024 Leu/Ile/Val-binding protein homolog 4 Brucella suis biovar 1 (strain 1330)
Q57A58 1.72e-08 59 25 8 268 3 BruAb2_0024 Leu/Ile/Val-binding protein homolog 4 Brucella abortus biovar 1 (strain 9-941)
Q2YL86 1.72e-08 59 25 8 268 3 BAB2_0023 Leu/Ile/Val-binding protein homolog 4 Brucella abortus (strain 2308)
Q8YDV4 1.77e-08 59 25 8 268 3 BMEII0070 Leu/Ile/Val-binding protein homolog 4 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q578E0 8.79e-07 53 24 7 274 3 BruAb2_0578 Leu/Ile/Val-binding protein homolog 6 Brucella abortus biovar 1 (strain 9-941)
Q2YKQ9 8.79e-07 53 24 7 274 3 BAB2_0593 Leu/Ile/Val-binding protein homolog 6 Brucella abortus (strain 2308)
Q8YC99 1.19e-06 53 24 7 274 3 BMEII0633 Leu/Ile/Val-binding protein homolog 6 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8FW17 1.23e-06 53 24 7 274 3 BRA0648 Leu/Ile/Val-binding protein homolog 6 Brucella suis biovar 1 (strain 1330)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11415
Feature type CDS
Gene -
Product branched-chain amino acid ABC transporter substrate-binding protein
Location 426095 - 427207 (strand: 1)
Length 1113 (nucleotides) / 370 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2608
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF13458 Periplasmic binding protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0683 Amino acid transport and metabolism (E) E ABC-type branched-chain amino acid transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01999 branched-chain amino acid transport system substrate-binding protein ABC transporters
Quorum sensing		 -

Protein Sequence

MNKKMKTAIIAGAVSCALSATVYAEDINVAVVGAMSGPVAQYGDMEFTGARQAVEDINAKGGINGNKLVIKEYDDACDPKQAVAVANKVINDGMRYVIGHLCSSSTQPASDIYEDEGILMITPAATNADLTTRGYSLIMRTTGLDSDQGPTAAKYIMDTIKPQRIAVVHDKQQYGEGLARSVKESLNKAGVKEVLFEGVTAGDKDFSALVARLKKENVDFVYFGGYYPEMGQILRQAKQNGLNIRFMGPEGVGNSSLSNIAGDASEGMLVTLPKRYDQVPANKPVVDALSAKKLDASGPFIWTTYAALQSLTTAMTRSGSMEPADLAADLKAKPVETVMGELSWTPNGDLKGFEFGVFEWHKDGTSSPLN

Flanking regions ( +/- flanking 50bp)

ATTTACTGATTTTGCGGTAACTCAGCAGATAACCGACGGGGATATTTCCGATGAATAAAAAAATGAAAACAGCAATCATTGCCGGGGCAGTCTCTTGTGCACTGAGTGCAACGGTATATGCAGAAGATATCAATGTTGCGGTTGTGGGGGCGATGTCCGGTCCGGTTGCGCAATATGGCGACATGGAATTTACCGGTGCGCGCCAGGCTGTTGAGGACATTAATGCCAAAGGTGGCATCAATGGTAATAAGCTGGTTATCAAAGAATATGATGATGCCTGTGATCCGAAGCAGGCGGTTGCGGTTGCCAATAAAGTTATTAATGACGGCATGCGCTATGTTATCGGGCACCTCTGCTCCTCTTCAACTCAACCTGCATCGGATATTTATGAAGATGAAGGGATACTGATGATCACCCCTGCGGCAACCAATGCGGACTTAACCACCCGTGGTTACTCTCTGATAATGCGCACCACAGGGCTGGATTCTGACCAGGGACCGACTGCCGCGAAATACATTATGGATACGATTAAACCTCAGCGCATTGCCGTTGTACATGATAAGCAGCAGTACGGCGAAGGGCTGGCGCGTTCAGTTAAAGAGAGCCTGAATAAAGCCGGTGTGAAAGAGGTACTGTTTGAAGGTGTGACCGCAGGGGATAAAGATTTCTCCGCGCTGGTTGCCCGCCTGAAGAAAGAGAATGTCGATTTTGTCTATTTCGGCGGCTATTACCCGGAAATGGGGCAGATTTTACGCCAGGCAAAACAGAACGGGCTGAATATCCGCTTTATGGGACCGGAAGGCGTGGGGAACTCTTCACTTTCCAATATCGCCGGTGACGCCTCAGAGGGCATGCTGGTAACACTGCCGAAACGCTATGACCAGGTTCCTGCGAACAAACCGGTTGTTGATGCACTGAGTGCGAAAAAACTGGATGCATCAGGGCCGTTTATCTGGACAACCTATGCAGCACTGCAATCCCTGACTACTGCAATGACCCGCAGCGGCAGTATGGAACCGGCTGATCTCGCGGCTGACCTGAAAGCAAAACCGGTTGAAACGGTGATGGGCGAACTGAGCTGGACACCAAACGGTGACCTGAAAGGGTTTGAATTCGGCGTATTTGAGTGGCACAAAGACGGAACATCTTCACCGCTGAACTGATCCGCCTCAGTAACTTATGCAGGCCGTGTATTTCAGGGAGTGCGCTATGT