COG0683


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0683, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type branched-chain amino acid transport system, periplasmic component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG0683 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2608 FBDBKF_03480 101459 102571 -1 livK ABC-type branched-chain amino acid transport system, periplasmic component Morganella morganii S1
1 group_2608 EHELCC_07055 144532 145644 1 livK ABC-type branched-chain amino acid transport system, periplasmic component Morganella morganii S2
2 group_2608 NLDBIP_07380 144405 145517 1 livK ABC-type branched-chain amino acid transport system, periplasmic component Morganella morganii S4
3 group_2608 LHKJJB_06915 108151 109263 1 livK ABC-type branched-chain amino acid transport system, periplasmic component Morganella morganii S3
4 group_2608 HKOGLL_04015 124124 125236 -1 livK ABC-type branched-chain amino acid transport system, periplasmic component Morganella morganii S5
5 group_4000 F4V73_RS02445 517141 517671 -1 DUF4823 domain-containing protein Morganella psychrotolerans
6 group_2608 F4V73_RS11415 426095 427207 1 branched-chain amino acid ABC transporter substrate-binding protein Morganella psychrotolerans