Homologs in group_767

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03535 FBDBKF_03535 88.4 Morganella morganii S1 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
EHELCC_07000 EHELCC_07000 88.4 Morganella morganii S2 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
NLDBIP_07325 NLDBIP_07325 88.4 Morganella morganii S4 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
LHKJJB_06860 LHKJJB_06860 88.4 Morganella morganii S3 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
HKOGLL_04070 HKOGLL_04070 88.4 Morganella morganii S5 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase
PMI_RS17935 PMI_RS17935 61.3 Proteus mirabilis HI4320 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase

Distribution of the homologs in the orthogroup group_767

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_767

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ADX9 7.2e-86 254 63 0 194 1 rsmD Ribosomal RNA small subunit methyltransferase D Escherichia coli (strain K12)
P0ADY0 7.2e-86 254 63 0 194 3 rsmD Ribosomal RNA small subunit methyltransferase D Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44869 8.29e-74 224 58 3 183 1 rsmD Ribosomal RNA small subunit methyltransferase D Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57136 1.15e-48 160 38 2 181 3 rsmD Ribosomal RNA small subunit methyltransferase D Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89B29 8.51e-45 150 40 2 179 3 rsmD Ribosomal RNA small subunit methyltransferase D Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O34331 5.53e-27 104 31 2 184 3 ylbH Putative rRNA methyltransferase YlbH Bacillus subtilis (strain 168)
I6XFS7 4.09e-22 91 37 6 185 1 Rv2966c RNA/DNA methyltransferase Rv2966c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q9ZD05 5.75e-16 76 25 6 223 4 RP545 Uncharacterized methylase RP545 Rickettsia prowazekii (strain Madrid E)
Q74I68 6.96e-06 49 34 3 88 3 LJ_1698 Uncharacterized RNA methyltransferase LJ_1698 Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533)
Q8DKB7 0.00064 43 30 3 109 3 tlr0942 Uncharacterized RNA methyltransferase tlr0942 Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11365
Feature type CDS
Gene rsmD
Product 16S rRNA (guanine(966)-N(2))-methyltransferase
Location 414404 - 415000 (strand: -1)
Length 597 (nucleotides) / 198 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_767
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03602 Conserved hypothetical protein 95

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0742 Translation, ribosomal structure and biogenesis (J) J 16S rRNA G966 N2-methylase RsmD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08316 16S rRNA (guanine966-N2)-methyltransferase [EC:2.1.1.171] - -

Protein Sequence

MVKKAHSAPQGQIRIIAGLWRGRKLPVLTHDGLRPTTDRVRETLFNWLMPVINGARCLDAFAGSGALGFEALSRHAAAVTFIELNRAVATQISANARLLTCDHATVVNQSAPQFLAQPGTPFDVVFLDPPFRKGLLQETVDLLEQNGWLSANAMIYAEAEAESDPLIVPANWLCHREKVAGQVAYRLYLRQATAEQAN

Flanking regions ( +/- flanking 50bp)

TTGGGTATAGAACATATTAATAATTTCAGAATTAATAAGTTGCGAAAGTTATGGTAAAAAAAGCACATAGCGCACCTCAGGGGCAAATCCGCATTATTGCCGGTCTGTGGCGCGGACGAAAACTGCCTGTTCTGACACACGACGGCCTTCGCCCGACAACCGATCGCGTGCGCGAAACCCTGTTTAACTGGCTGATGCCGGTGATAAATGGGGCGCGTTGCCTTGATGCGTTCGCGGGCAGCGGTGCGCTCGGGTTTGAAGCCCTTTCCCGTCATGCTGCTGCGGTGACATTTATTGAACTGAACCGCGCCGTTGCCACTCAAATCAGCGCTAACGCCCGTTTACTGACCTGCGATCACGCAACGGTGGTAAACCAGAGTGCGCCACAGTTTCTGGCACAACCGGGAACGCCGTTTGATGTGGTGTTTCTCGACCCGCCGTTCCGCAAAGGGTTATTACAGGAAACGGTTGATTTGCTGGAACAAAATGGCTGGCTGAGCGCCAATGCGATGATTTACGCGGAAGCGGAAGCTGAATCAGATCCGCTGATTGTCCCGGCTAACTGGTTGTGTCACCGGGAGAAAGTGGCCGGTCAGGTTGCGTATCGTCTTTACCTGCGGCAGGCAACTGCTGAGCAGGCTAATTAACAGGAGTCCGTATGTTCTGGATTAATATCGGCCGGTTGCTGATGTTATCA