Homologs in group_183

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07035 FBDBKF_07035 19.4 Morganella morganii S1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
EHELCC_03935 EHELCC_03935 19.4 Morganella morganii S2 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
NLDBIP_03935 NLDBIP_03935 19.4 Morganella morganii S4 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
LHKJJB_09765 LHKJJB_09765 19.4 Morganella morganii S3 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
HKOGLL_09210 HKOGLL_09210 19.4 Morganella morganii S5 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
F4V73_RS01225 F4V73_RS01225 19.6 Morganella psychrotolerans - ATP-dependent endonuclease
PMI_RS03370 PMI_RS03370 22.7 Proteus mirabilis HI4320 - ATP-dependent endonuclease
PMI_RS12045 PMI_RS12045 18.7 Proteus mirabilis HI4320 - AAA family ATPase

Distribution of the homologs in the orthogroup group_183

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_183

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P13520 2.95e-158 468 42 13 605 1 old Old nuclease Escherichia phage P2
E8PLM2 9.85e-16 84 21 16 475 1 old OLD nuclease Thermus scotoductus (strain ATCC 700910 / SA-01)
P0DW47 2.09e-07 57 30 11 218 3 gajA Endonuclease GajA Bacillus cereus (strain HuB5-5)
Q60298 1.92e-06 53 29 3 137 4 MJECL43 Uncharacterized protein MJECL43 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
J8H9C1 0.001 45 25 8 251 1 gajA Endonuclease GajA Bacillus cereus (strain VD045)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11315
Feature type CDS
Gene -
Product AAA family ATPase
Location 403673 - 405466 (strand: -1)
Length 1794 (nucleotides) / 597 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_183
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF13304 AAA domain, putative AbiEii toxin, Type IV TA system
PF20469 Overcoming lysogenization defect protein-like, TOPRIM domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3593 Replication, recombination and repair (L) L Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07459 putative ATP-dependent endonuclease of the OLD family - -

Protein Sequence

MSVYIKSLDINNYLSCKNTSFELSPFTPLVGYNNAGKSNILSAIKWLLEKRTLSIEETFNNKECEVSVSATIEGIDDDALALITSDNRKKISPYISEGTIKVRRIQRKISGAKAADIKFEVFDTNKNPSLWVSNPGGIEESIKNIFPEIIHIKAMTDAVEDSTKNKTSSTIGKLLSQIIESVQEIHATEFNNSIRRLSDLLAYDGSERFKTINETDNGINEIIGSYFPDISVKIHFPTPSLEEIFKSGTLKVFEHGKDIRDMSMFGHGSQRTIQMALIQYLAKIKSNSSTKKNPNILLLIDEPELYLHPTAVELLREALIILSKNGYQVIITTHSGLMITSKQANIAVLVRKSKERCTETRKTLKQAIAEKMKDTKEAHHFDKIFSLTNSSQILFSEKVIIVEGKTELKVIDPIYRVIKGNSLGANKIALLSIDGKTAIKRTKEILNCLDVPHRVITDLDYITSAIAHGYIEKECPDIMDIKATFIKMQNEKPDEIKIDKTTGFPSNIKNGNTAAYAFSCLAKHPDAIIPISNIKKKLKDDNIYIWSHGAIEDVFGFDEKNESEWFDFKSKLDDSKHDDWKMIVENSDDIEGFINWI

Flanking regions ( +/- flanking 50bp)

CTAAATTACAAAAAAACTGAAACCAAAACTATAAACCGCAAGGAATTGACATGTCTGTATACATAAAGAGTCTAGATATAAACAACTACCTTTCATGTAAAAACACTTCATTTGAATTATCTCCATTCACCCCCCTTGTTGGATATAATAACGCGGGAAAATCAAACATTTTATCAGCAATAAAATGGTTATTAGAAAAAAGAACATTATCTATAGAGGAAACTTTTAATAATAAAGAGTGTGAAGTTTCTGTATCTGCAACTATAGAGGGCATTGATGATGATGCACTCGCATTAATTACTAGTGACAATAGGAAAAAAATAAGCCCTTATATTTCTGAAGGAACAATAAAGGTTAGACGGATACAACGAAAAATATCTGGTGCAAAGGCTGCTGATATAAAGTTCGAGGTTTTTGATACTAATAAAAATCCATCATTATGGGTTAGCAATCCCGGTGGAATAGAAGAATCCATTAAAAATATATTCCCAGAGATAATTCATATTAAAGCTATGACTGATGCCGTTGAAGATTCAACAAAAAATAAAACCTCTTCAACAATAGGAAAGCTATTATCCCAAATAATTGAAAGCGTTCAAGAAATTCATGCTACTGAATTTAATAACTCAATAAGAAGATTAAGTGATTTGTTAGCATATGATGGTAGTGAAAGGTTTAAAACAATAAATGAAACTGATAATGGAATAAATGAAATAATAGGCTCATACTTCCCTGACATTAGTGTAAAAATACATTTCCCAACCCCTAGCCTTGAAGAAATATTTAAATCAGGAACCTTAAAAGTTTTTGAGCATGGAAAAGATATTCGTGATATGTCAATGTTTGGTCATGGTAGTCAAAGAACAATTCAGATGGCGTTGATTCAATACCTCGCTAAAATTAAATCCAACTCATCTACAAAGAAAAATCCTAATATTTTATTACTGATTGATGAGCCAGAATTATACTTACACCCTACCGCAGTAGAGTTATTAAGAGAAGCTCTTATAATTTTATCAAAAAATGGATACCAAGTAATTATCACTACTCACTCCGGATTAATGATAACTTCCAAACAAGCAAATATAGCTGTTCTAGTCAGAAAATCTAAAGAAAGGTGTACTGAGACAAGAAAAACACTTAAACAAGCTATTGCTGAAAAAATGAAAGATACAAAAGAAGCTCATCACTTTGATAAAATATTCAGTCTAACAAATTCATCTCAAATACTTTTTTCTGAAAAAGTGATCATTGTTGAAGGAAAAACAGAACTAAAAGTAATTGACCCAATATATAGAGTTATTAAAGGTAATAGTCTTGGCGCAAATAAAATAGCATTATTATCTATTGATGGAAAAACTGCAATAAAGCGAACCAAAGAAATATTAAATTGCCTTGATGTTCCACATCGCGTAATTACTGATCTTGATTATATTACGTCGGCAATCGCACATGGTTATATCGAAAAGGAATGTCCTGACATAATGGATATAAAGGCGACATTTATCAAAATGCAAAATGAAAAACCTGATGAAATAAAAATAGATAAGACTACCGGTTTTCCTTCTAATATAAAAAATGGTAATACAGCTGCATATGCTTTTTCATGTTTAGCTAAACATCCTGATGCAATAATTCCAATTTCTAATATAAAGAAAAAACTTAAAGATGATAACATATATATATGGTCTCATGGTGCTATAGAAGATGTTTTTGGTTTTGATGAAAAAAACGAATCAGAATGGTTTGACTTTAAATCTAAACTAGATGACTCTAAACATGATGACTGGAAAATGATTGTAGAAAACTCTGATGATATTGAAGGCTTTATTAATTGGATTTAATATAAGGTAAATATCTTAAGATAGTATTTGCCATCACAATAGAGTGGTGG