COG3593

Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3593, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 16 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG3593 is associated with 16 different proteins (see tab "Protein list" and "Profile")
The 16 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_183 FBDBKF_07035 70773 72455 1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S1
1 group_3457 FBDBKF_15660 65290 66804 -1 ABC transporter ATP-binding protein Morganella morganii S1
2 group_183 EHELCC_03935 113731 115413 -1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S2
3 group_3457 EHELCC_16015 64590 66104 -1 ABC transporter ATP-binding protein Morganella morganii S2
4 group_183 NLDBIP_03935 113527 115209 -1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S4
5 group_3457 NLDBIP_16350 14559 16073 1 ABC transporter ATP-binding protein Morganella morganii S4
6 group_183 LHKJJB_09765 113641 115323 -1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S3
7 group_3457 LHKJJB_16450 64590 66104 -1 ABC transporter ATP-binding protein Morganella morganii S3
8 group_183 HKOGLL_09210 75729 77411 1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains Morganella morganii S5
9 group_3457 HKOGLL_16220 64590 66104 -1 ABC transporter ATP-binding protein Morganella morganii S5
10 group_183 F4V73_RS01225 258343 260028 1 ATP-dependent endonuclease Morganella psychrotolerans
11 group_183 F4V73_RS11315 403673 405466 -1 AAA family ATPase Morganella psychrotolerans
12 group_3695 PMI_RS19510 369937 370389 -1 AAA family ATPase Proteus mirabilis HI4320
13 group_183 PMI_RS03370 743309 744982 1 ATP-dependent endonuclease Proteus mirabilis HI4320
14 group_3695 PMI_RS11650 2573613 2574920 -1 AAA family ATPase Proteus mirabilis HI4320
15 group_183 PMI_RS12045 2663903 2665867 -1 AAA family ATPase Proteus mirabilis HI4320