Orthogroup:group_183


Homologs in group_183

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9 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07035 FBDBKF_07035 Morganella morganii S1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
EHELCC_03935 EHELCC_03935 Morganella morganii S2 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
NLDBIP_03935 NLDBIP_03935 Morganella morganii S4 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
LHKJJB_09765 LHKJJB_09765 Morganella morganii S3 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
HKOGLL_09210 HKOGLL_09210 Morganella morganii S5 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
F4V73_RS01225 F4V73_RS01225 Morganella psychrotolerans - ATP-dependent endonuclease
F4V73_RS11315 F4V73_RS11315 Morganella psychrotolerans - AAA family ATPase
PMI_RS03370 PMI_RS03370 Proteus mirabilis HI4320 - ATP-dependent endonuclease
PMI_RS12045 PMI_RS12045 Proteus mirabilis HI4320 - AAA family ATPase

Distribution of group_183 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_183 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_183

Orthogroup content: 9 members

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This page summarizes the annotation of all members of the orthologous group group_183.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ybjD 5
2 - 4

Product

# Product Occurence
1 putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains 5
2 ATP-dependent endonuclease 2
3 AAA family ATPase 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3593 9 L Replication, recombination and repair (L) Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07459 9 putative ATP-dependent endonuclease of the OLD family - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF11398 7 Protein of unknown function (DUF2813)
PF13175 1 AAA ATPase domain
PF13304 2 AAA domain, putative AbiEii toxin, Type IV TA system
PF20469 9 Overcoming lysogenization defect protein-like, TOPRIM domain

Annotations of the 6 SwissProt hits

Annotation Number of occurrences
Endonuclease GajA 2
OLD nuclease 1
Old nuclease 1
Uncharacterized protein MJECL43 1
Uncharacterized protein YbjD 1

Protein length

Min length 557
Max length 654
Mean length (sd) 574.3 (32.3)
Median length 560.0

Protein length distribution