Homologs in group_801

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03765 FBDBKF_03765 90.1 Morganella morganii S1 epmB EF-P beta-lysylation protein EpmB
EHELCC_06770 EHELCC_06770 90.1 Morganella morganii S2 epmB EF-P beta-lysylation protein EpmB
NLDBIP_07095 NLDBIP_07095 90.1 Morganella morganii S4 epmB EF-P beta-lysylation protein EpmB
LHKJJB_06630 LHKJJB_06630 90.1 Morganella morganii S3 epmB EF-P beta-lysylation protein EpmB
HKOGLL_04300 HKOGLL_04300 90.1 Morganella morganii S5 epmB EF-P beta-lysylation protein EpmB
PMI_RS12515 PMI_RS12515 71.6 Proteus mirabilis HI4320 epmB EF-P beta-lysylation protein EpmB

Distribution of the homologs in the orthogroup group_801

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_801

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZKB8 0.0 529 75 0 342 3 epmB L-lysine 2,3-aminomutase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39280 0.0 515 72 0 341 1 epmB L-lysine 2,3-aminomutase Escherichia coli (strain K12)
P44641 7.96e-145 415 60 3 333 3 epmB L-lysine 2,3-aminomutase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89B32 1.64e-125 366 51 1 330 3 epmB L-lysine 2,3-aminomutase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q44634 8.37e-120 352 51 3 328 3 epmB L-lysine 2,3-aminomutase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q6LYX4 6.72e-54 186 34 6 323 3 ablA L-lysine 2,3-aminomutase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
Q9XBQ8 8.47e-53 182 34 4 323 1 kamA L-lysine 2,3-aminomutase Clostridium subterminale
E3PRJ8 3.96e-51 178 34 5 325 3 kamA L-lysine 2,3-aminomutase Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / CCUG 9281 / NCIMB 10654 / HF)
O34676 8.23e-48 170 32 6 321 1 kamA L-lysine 2,3-aminomutase Bacillus subtilis (strain 168)
O66761 2.43e-47 167 32 3 289 3 aq_454 Putative L-lysine 2,3-aminomutase aq_454 Aquifex aeolicus (strain VF5)
Q8RHX4 2.42e-46 165 38 4 259 1 kamA L-lysine 2,3-aminomutase Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Q8PYC9 4.14e-44 159 32 4 325 2 ablA L-lysine 2,3-aminomutase Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q185C5 2.08e-39 147 30 6 321 1 eam Glutamate 2,3-aminomutase Clostridioides difficile (strain 630)
O67554 1.95e-36 138 30 3 291 3 aq_1632 Putative L-lysine 2,3-aminomutase aq_1632 Aquifex aeolicus (strain VF5)
O83158 1.43e-35 135 33 5 258 3 TP_0121 Putative L-lysine 2,3-aminomutase Treponema pallidum (strain Nichols)
Q58051 2.61e-17 86 28 3 192 3 MJ0634 Uncharacterized KamA family protein MJ0634 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11110
Feature type CDS
Gene epmB
Product EF-P beta-lysylation protein EpmB
Location 360091 - 361119 (strand: -1)
Length 1029 (nucleotides) / 342 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_801
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF04055 Radical SAM superfamily
PF13353 4Fe-4S single cluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1509 Amino acid transport and metabolism (E) E L-lysine 2,3-aminomutase (EF-P beta-lysylation pathway)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19810 L-lysine 2,3-aminomutase [EC:5.4.3.-] - -

Protein Sequence

MVDIVTQKPLAREVWLQQLADSVTNPTELLEILGLEQDENWRAGLDARRLFALRVPRPFIAKMEKGNPQDPLLLQTMTHRAEFDLTPGFSEDPLDEQHNVVPGLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYEDNKGTRHNWQQALDYIANHPELNEIIFSGGDPLMAKDNELDWLLTQLEAIPHILRLRIHSRLPVVIPERITDALTARLHDSRLQIILVTHINHANEIDDVLKKKMHQLRKNGVTLLNQGVLLRGINDDAGVLADLSNALFDAGILPYYLHVLDKVQGAAHFLVSDDEARQIMRDLLPRVSGYLVPRLTREIGGEPSKTPVDLQLRQS

Flanking regions ( +/- flanking 50bp)

AAGTAGCCATGGAAATCCTCTAATTTTAAATAAATGGCATAGCCAAAAAAATGGTCGATATTGTAACCCAAAAACCACTTGCCCGAGAAGTCTGGCTACAACAACTTGCTGATTCTGTCACCAATCCAACCGAATTACTGGAAATTCTGGGTCTGGAACAGGATGAAAACTGGCGTGCCGGCCTTGATGCCCGCCGGTTATTTGCACTGCGCGTTCCCCGCCCGTTCATCGCAAAGATGGAAAAAGGCAATCCGCAGGATCCGCTACTGCTTCAGACCATGACGCACAGGGCTGAATTTGACCTGACACCCGGGTTTTCTGAAGATCCGCTGGATGAACAACACAACGTTGTTCCGGGGTTACTGCACAAATATCACAACCGGGCGCTGCTTTTAGTAAAAGGCGGGTGTGCGGTCAACTGCCGCTACTGCTTCCGTCGTCACTTTCCGTATGAAGACAATAAGGGCACCAGACATAACTGGCAACAGGCGCTCGATTATATCGCTAACCATCCTGAACTCAATGAAATCATTTTCTCCGGCGGTGATCCGCTGATGGCAAAAGATAATGAGCTGGACTGGCTGCTCACACAACTCGAAGCTATCCCGCATATTCTGCGTCTGCGTATTCACAGCCGTCTGCCGGTCGTCATCCCTGAGCGCATTACAGACGCATTGACTGCCCGCCTGCACGACTCCCGGTTACAGATAATTTTAGTCACACATATCAATCACGCGAATGAAATTGATGATGTATTAAAGAAAAAAATGCATCAGTTACGGAAAAATGGCGTAACACTGCTGAATCAGGGCGTTTTATTGCGCGGTATCAATGATGACGCCGGTGTTCTCGCCGATCTCAGCAATGCACTCTTCGACGCCGGTATTCTGCCTTACTATCTGCATGTTCTGGATAAAGTACAGGGTGCGGCACATTTTCTGGTTAGTGATGATGAAGCCCGCCAGATAATGCGTGACCTTCTTCCGCGCGTGTCCGGTTATCTGGTGCCGCGCCTGACCCGTGAAATCGGCGGCGAGCCCAGCAAAACACCGGTTGATCTTCAGCTTCGCCAGAGTTAAGTATAAATTTATAACCGATTTTCATGAGTGCCCCCAGCCAGGATTAGCTA