Homologs in group_870

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_06770 EHELCC_06770 100.0 Morganella morganii S2 epmB EF-P beta-lysylation protein EpmB
NLDBIP_07095 NLDBIP_07095 100.0 Morganella morganii S4 epmB EF-P beta-lysylation protein EpmB
LHKJJB_06630 LHKJJB_06630 100.0 Morganella morganii S3 epmB EF-P beta-lysylation protein EpmB
HKOGLL_04300 HKOGLL_04300 100.0 Morganella morganii S5 epmB EF-P beta-lysylation protein EpmB
F4V73_RS11110 F4V73_RS11110 90.1 Morganella psychrotolerans epmB EF-P beta-lysylation protein EpmB
PMI_RS12515 PMI_RS12515 69.9 Proteus mirabilis HI4320 epmB EF-P beta-lysylation protein EpmB

Distribution of the homologs in the orthogroup group_870

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_870

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZKB8 0.0 526 74 0 342 3 epmB L-lysine 2,3-aminomutase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39280 0.0 520 72 0 341 1 epmB L-lysine 2,3-aminomutase Escherichia coli (strain K12)
P44641 8.22e-139 400 60 2 320 3 epmB L-lysine 2,3-aminomutase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89B32 1.71e-125 366 51 1 334 3 epmB L-lysine 2,3-aminomutase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q44634 5.79e-123 360 51 2 325 3 epmB L-lysine 2,3-aminomutase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q9XBQ8 2.04e-52 181 33 4 323 1 kamA L-lysine 2,3-aminomutase Clostridium subterminale
Q6LYX4 5.36e-51 178 33 6 323 3 ablA L-lysine 2,3-aminomutase Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
E3PRJ8 4.08e-50 175 33 5 325 3 kamA L-lysine 2,3-aminomutase Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / CCUG 9281 / NCIMB 10654 / HF)
O34676 2.29e-46 166 32 8 329 1 kamA L-lysine 2,3-aminomutase Bacillus subtilis (strain 168)
Q8RHX4 2.58e-46 165 37 4 259 1 kamA L-lysine 2,3-aminomutase Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
O66761 2.1e-44 159 32 3 289 3 aq_454 Putative L-lysine 2,3-aminomutase aq_454 Aquifex aeolicus (strain VF5)
Q8PYC9 1.53e-43 158 31 4 325 2 ablA L-lysine 2,3-aminomutase Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q185C5 9.99e-38 142 30 8 325 1 eam Glutamate 2,3-aminomutase Clostridioides difficile (strain 630)
O83158 7.51e-36 136 32 5 258 3 TP_0121 Putative L-lysine 2,3-aminomutase Treponema pallidum (strain Nichols)
O67554 1.5e-35 135 29 4 291 3 aq_1632 Putative L-lysine 2,3-aminomutase aq_1632 Aquifex aeolicus (strain VF5)
Q58051 4.75e-16 82 28 2 180 3 MJ0634 Uncharacterized KamA family protein MJ0634 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_03765
Feature type CDS
Gene epmB
Product EF-P beta-lysylation protein EpmB
Location 156950 - 157978 (strand: 1)
Length 1029 (nucleotides) / 342 (amino acids)
In genomic island -

Contig

Accession contig_3
Length 210665 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_870
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04055 Radical SAM superfamily
PF13353 4Fe-4S single cluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1509 Amino acid transport and metabolism (E) E L-lysine 2,3-aminomutase (EF-P beta-lysylation pathway)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19810 L-lysine 2,3-aminomutase [EC:5.4.3.-] - -

Protein Sequence

MVDIVTQKQPAREVWLHQLTDSVTNPTELLAILGLEQDENWRAGTDARRLFALRVPRPFIAKMEKGNPCDPLLLQTMTHRAEFDLTPGFSDDPLDEQHSVVPGLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYEDNKGTRHNWQQALDYIANHPELNEIIFSGGDPLMAKDHELDWLLTQLEAIPHIQRLRIHSRLPVVIPERITPGLTARFRDSRLQIILVTHINHANEIDDTLKEKMNQLRESRVTLLNQSVLLRDVNDNAEVLAQLSNALFDAGILPYYLHVLDKVQGAGHFLISDDEARRIMHDLLPRISGYLVPRLTREIGGEPSKTPIDLRLRQS

Flanking regions ( +/- flanking 50bp)

AAGTAGCCATGGAAATCCTCTAATTTTAAATAAATGGCATAGCCAAAAAAATGGTCGATATTGTAACCCAAAAACAACCCGCCCGAGAAGTCTGGCTGCATCAACTCACTGATTCTGTCACTAACCCAACAGAACTGCTGGCAATATTAGGTCTGGAACAGGACGAAAACTGGCGTGCCGGTACTGATGCCCGCCGGTTGTTTGCTCTGCGTGTCCCCCGTCCTTTTATCGCCAAAATGGAAAAAGGCAATCCGTGCGATCCGTTATTACTTCAGACCATGACACACAGGGCTGAATTTGACCTGACCCCGGGGTTCTCTGACGATCCGCTGGATGAACAACACAGTGTTGTTCCGGGACTACTGCATAAATATCACAACCGGGCATTGCTGTTAGTGAAAGGCGGGTGCGCGGTCAACTGCCGCTACTGTTTCCGCCGTCACTTCCCGTATGAGGACAATAAAGGCACCAGACATAACTGGCAGCAGGCGCTCGATTATATCGCTAACCATCCTGAACTCAATGAAATCATTTTCTCCGGCGGTGATCCGCTGATGGCAAAAGACCATGAGCTGGACTGGCTGCTGACGCAACTGGAAGCGATTCCCCATATTCAGCGGCTGCGCATTCACAGCCGTCTGCCTGTCGTGATCCCTGAACGCATTACGCCGGGACTGACCGCGCGTTTCCGCGATTCACGGCTACAGATAATTTTAGTCACACATATCAATCACGCGAATGAAATCGACGATACATTGAAAGAAAAAATGAATCAGCTGCGTGAAAGCCGCGTTACCCTGCTCAATCAGAGCGTTCTTCTGCGTGATGTGAATGACAATGCAGAGGTGCTGGCACAGCTCAGTAATGCGCTGTTTGACGCCGGTATTCTGCCTTATTACCTGCATGTGCTGGATAAAGTACAGGGTGCGGGACATTTTCTGATCAGTGATGATGAAGCCCGCCGCATCATGCATGATCTTCTGCCGCGTATTTCCGGGTATCTGGTGCCGCGTCTGACCCGGGAAATCGGTGGTGAGCCGAGTAAAACGCCGATCGATCTCCGTCTGCGTCAGAGCTGAGTATTACCACGTAAACACGGTCATCTGAAGAAATAGTATTTTACAGGTAA