Orthogroup:group_870



Homologs in group_870

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04415 FBDBKF_04415 Morganella morganii S1 leuB 3-isopropylmalate dehydrogenase
EHELCC_05705 EHELCC_05705 Morganella morganii S2 leuB 3-isopropylmalate dehydrogenase
NLDBIP_06025 NLDBIP_06025 Morganella morganii S4 leuB 3-isopropylmalate dehydrogenase
LHKJJB_02905 LHKJJB_02905 Morganella morganii S3 leuB 3-isopropylmalate dehydrogenase
HKOGLL_06380 HKOGLL_06380 Morganella morganii S5 leuB 3-isopropylmalate dehydrogenase
F4V73_RS08860 F4V73_RS08860 Morganella psychrotolerans leuB 3-isopropylmalate dehydrogenase
PMI_RS10270 PMI_RS10270 Proteus mirabilis HI4320 leuB 3-isopropylmalate dehydrogenase

Distribution of group_870 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_870 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_870

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_870.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 leuB 7

Product

# Product Occurence
1 3-isopropylmalate dehydrogenase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0473 7 CE Energy production and conversion (C)
Amino acid transport and metabolism (E)
Isocitrate/isopropylmalate dehydrogenase

Kegg Ortholog Annotation(s)

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00180 7 Isocitrate/isopropylmalate dehydrogenase

Annotations of the 401 SwissProt hits

Annotation Number of occurrences
3-isopropylmalate dehydrogenase 286
3-isopropylmalate dehydrogenase (Fragment) 2
3-isopropylmalate dehydrogenase 1 3
3-isopropylmalate dehydrogenase 1, chloroplastic 1
3-isopropylmalate dehydrogenase 2 3
3-isopropylmalate dehydrogenase 2, chloroplastic 1
3-isopropylmalate dehydrogenase 3, chloroplastic 1
3-isopropylmalate dehydrogenase A 1
3-isopropylmalate dehydrogenase AMT6 1
3-isopropylmalate dehydrogenase B 1
3-isopropylmalate dehydrogenase gloI 1
3-isopropylmalate dehydrogenase, chloroplastic 2
3-isopropylmalate/3-methylmalate dehydrogenase 1
D-malate dehydrogenase [decarboxylating] 1
Homoisocitrate dehydrogenase 2
Homoisocitrate dehydrogenase, mitochondrial 1
Isocitrate dehydrogenase [NADP] 28
Isocitrate dehydrogenase [NADP] 1 2
Isocitrate dehydrogenase [NADP] cytoplasmic 8
Isocitrate dehydrogenase [NADP], mitochondrial 5
Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) 1
Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial 1
Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial 1
Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial 1
Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial 1
Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial 1
Isocitrate dehydrogenase [NAD] regulatory subunit A, mitochondrial 1
Isocitrate dehydrogenase [NAD] regulatory subunit B, mitochondrial 1
Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial 4
Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial 3
Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 6
Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) 1
Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial 5
Isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial 2
Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial 2
Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial (Fragment) 1
Isocitrate/homoisocitrate dehydrogenase 3
Isopropyl malate dehydrogenase htyC 1
Probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial 2
Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial 2
Probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial 1
Probable tartrate dehydrogenase/decarboxylase 1
Probable tartrate dehydrogenase/decarboxylase TtuC 2
Probable tartrate dehydrogenase/decarboxylase TtuC' 3
Protein DlpA 1
Putative isocitrate dehydrogenase [NAD] subunit-like 4 1
Tartrate dehydrogenase/decarboxylase 1

Protein length

Min length 363
Max length 371
Mean length (sd) 364.1 (3.0)
Median length 363.0

Protein length distribution