Homologs in group_810

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03825 FBDBKF_03825 87.4 Morganella morganii S1 - transcriptional regulator
EHELCC_06710 EHELCC_06710 87.4 Morganella morganii S2 - transcriptional regulator
NLDBIP_07035 NLDBIP_07035 87.4 Morganella morganii S4 - transcriptional regulator
LHKJJB_06570 LHKJJB_06570 87.4 Morganella morganii S3 - transcriptional regulator
HKOGLL_04360 HKOGLL_04360 87.4 Morganella morganii S5 - transcriptional regulator
PMI_RS12600 PMI_RS12600 56.3 Proteus mirabilis HI4320 - transcriptional regulator

Distribution of the homologs in the orthogroup group_810

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_810

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACU9 5.68e-71 216 54 1 191 4 yjdC HTH-type transcriptional regulator YjdC Shigella flexneri
P0ACU7 5.68e-71 216 54 1 191 4 yjdC HTH-type transcriptional regulator YjdC Escherichia coli (strain K12)
P0ACU8 5.68e-71 216 54 1 191 4 yjdC HTH-type transcriptional regulator YjdC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11045
Feature type CDS
Gene -
Product transcriptional regulator
Location 345705 - 346277 (strand: -1)
Length 573 (nucleotides) / 190 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_810
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Protein Sequence

MQREEVLNQALSLLENHGILMPEITLIQNLNTDPARLRIFWPTHNDLVYDCLRYHGNQIDIWQRRVLLDESISGEDKLLARYTALAERVRENRFPGCLFIAACSAFPAAEHPIHQLSCQQKQSAFSFTLELLRELDIDDCEMVAHQLELILEGCLSKLLISRSQDDIATARRLAEDVLTIARCRKNGALS

Flanking regions ( +/- flanking 50bp)

CTCTCACGTTATTCTGAAAAGTATTGCTATCTTTAAAGGGAGAGCCTGCTGTGCAACGCGAAGAAGTCCTCAACCAGGCACTGAGTCTGCTGGAAAACCACGGCATACTGATGCCGGAAATCACTCTGATTCAAAACCTGAACACCGATCCCGCCCGCCTGCGTATTTTCTGGCCGACCCATAACGATCTGGTTTATGACTGCCTGCGTTATCACGGCAACCAGATTGATATCTGGCAGCGCCGCGTTCTGCTGGATGAATCTATATCCGGAGAAGATAAACTGCTGGCGCGCTATACCGCACTTGCAGAACGGGTCAGAGAAAACCGCTTCCCCGGCTGCCTGTTTATCGCTGCATGCAGCGCCTTTCCGGCTGCTGAACACCCGATTCACCAATTATCCTGCCAACAGAAACAAAGTGCTTTTTCGTTCACGCTGGAGCTGCTCAGAGAGCTGGATATTGATGACTGTGAAATGGTCGCACACCAGTTAGAACTGATTCTGGAAGGCTGCCTGAGCAAACTGCTGATATCGCGCAGTCAGGATGATATCGCCACCGCCCGGCGGCTGGCAGAAGATGTACTGACCATCGCCCGCTGCCGTAAAAACGGGGCGCTCAGCTGATTTATGCGTTGCGCGGATAATATCTGCGCACCTTTTGCATAAAAAGAGAA