Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 42.6 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 41.8 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 41.8 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 42.6 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 41.8 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 42.6 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 41.8 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 42.6 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 42.6 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 41.8 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 29.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 43.3 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01675 F4V73_RS01675 42.2 Morganella psychrotolerans fimD outer membrane usher protein FimD
F4V73_RS01860 F4V73_RS01860 35.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 21.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 34.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 37.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 31.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 39.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 28.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 36.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 0.0 706 45 14 846 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P30130 0.0 642 41 13 861 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P75857 0.0 625 40 13 851 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 0.0 623 39 13 851 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P42915 0.0 619 43 16 827 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P46009 0.0 604 38 14 884 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 0.0 589 37 16 880 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 0.0 569 37 15 855 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
Q56983 3.4e-150 465 35 21 843 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 3.4e-150 465 35 21 843 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P26949 1.04e-147 458 35 17 793 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P53517 6.99e-143 447 34 20 838 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33408 7.91e-143 446 34 18 789 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P46005 5.19e-134 423 34 22 824 3 aggC Outer membrane usher protein AggC Escherichia coli
P33388 1e-125 400 32 20 831 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
Q8X5K8 2.4e-123 384 42 8 492 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33397 7.75e-121 388 32 16 812 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45998 2.44e-118 382 32 16 812 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.23e-117 380 32 16 812 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33129 2.06e-109 358 32 25 861 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P46000 3.62e-106 349 32 25 822 3 fasD Outer membrane usher protein FasD Escherichia coli
P21647 1.13e-102 340 28 21 834 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33341 1.16e-101 337 29 19 857 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P53514 4.19e-91 308 29 28 830 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P33410 4.09e-90 307 30 21 814 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q8X5K7 1.75e-88 288 42 6 359 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P76655 2.21e-86 296 29 25 785 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P15484 2.95e-86 298 28 12 688 3 None Outer membrane usher protein CS3-2 Escherichia coli
P75750 2.6e-83 287 29 24 791 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P53512 2.02e-79 276 26 19 783 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 1.51e-76 268 25 19 802 3 cssD Outer membrane usher protein CssD Escherichia coli
P07110 2.46e-73 260 27 32 867 1 papC Outer membrane usher protein PapC Escherichia coli
Q7DBJ9 3.17e-72 245 37 3 357 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P77196 2.58e-70 252 26 21 838 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P76137 1.13e-68 235 35 4 362 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P37868 4.66e-68 244 28 26 800 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 1.15e-63 232 27 23 745 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 1.85e-47 185 26 25 772 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 3e-45 178 24 25 789 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10900
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 320896 - 323451 (strand: 1)
Length 2556 (nucleotides) / 851 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MKKQLMTLPENKIRMGSVPGKTRFLLNPVARFITVTIAVLMSTTHFAQADDYFNPAALNNINDENVADLVNLEQFSQSGTQLPGDYYVTVVVNNQNMGSATVRFIQNEKTQALVPVVTKAMLKEWGIKTDALPAFKELSDDEEISDTDARIPQSQAHFVFEQQRLNLSIPQAAMSQEARGFTDESQWDQGLPAFLLNYTVNGAKTWYSRSNKSQENQFVSLQSGVNLGAWRVRNFSTYSRNGGESNWSNVKNYVERNVQSLHSRLTLGDTATSGDVFESVPFRGVRMSSDDAMLPAGQRGFAPVVRGIAQSSAQVTIRQNGYVIYQTYVAPGPFEIADLYPSSYSGNLDVTIEEEDGRERTFVVPFSSLAMMQREGSLKYSLNLGEYRTGTENTKEPLFFEGSAAYGMPLNTTLYGGTIYSSDYQAYSLGAGLNLGRFGALSVDAIHAVTTQTARDEKEKGQSYRFQYSKSMMQTGTTLALAGYRYSTQGYYDFAEANENNGLSARYNKRTRIQADVSQSLGDTAGSLYFSAYQQNFWGQDGEERTVNTGYSNSFRRVNYSVAYTYTDTPATDKADHQFAVNISIPLGGSNNYSLISSMTTSRDGGTTAMAGFSGSALENNALSYSVQQGYDFRQHNNSGNAGLSYRGEKGFMNAGYNYGDNSQRVNYGVQGGVVVHPYGVTLSQPLGETIALVRAPGAAGVIVQNKNGVKTDSRGYAVIPSVTAYTKNDVALNINGMDENVELMNNSTTVVPTRGAVVLADMQTRIGSRLLLKLTRQGNALPFGAIASDADSDNSGIVDENGVVYLSGMPDSGKVNVKWGSRPDEQCTADYALTAGQSEQIVKQVTAQCR

Flanking regions ( +/- flanking 50bp)

AACCATACCACTACGTTATCCATTAATTAAGTCAGATTGAAATAAATAAAATGAAAAAACAATTAATGACATTACCGGAAAATAAAATACGGATGGGTAGCGTGCCGGGTAAAACACGGTTTTTATTAAATCCGGTTGCCCGCTTTATTACCGTAACTATTGCGGTACTGATGAGCACAACACACTTCGCACAGGCCGATGATTATTTTAATCCGGCGGCATTAAATAATATCAATGACGAGAATGTCGCTGATCTTGTCAACCTGGAGCAGTTCTCTCAGTCAGGAACACAATTGCCGGGTGATTATTACGTTACAGTTGTGGTGAATAATCAAAATATGGGTAGTGCCACGGTTCGCTTTATTCAGAATGAAAAAACGCAGGCATTAGTGCCGGTTGTGACGAAAGCAATGTTAAAAGAGTGGGGCATAAAAACAGATGCTCTGCCCGCATTTAAAGAATTATCCGATGATGAAGAGATTTCGGACACGGATGCCCGTATTCCTCAGTCACAGGCGCATTTTGTCTTTGAGCAGCAGCGCTTAAACCTGAGCATTCCACAGGCGGCGATGAGTCAGGAAGCCCGCGGGTTTACCGATGAATCACAGTGGGATCAGGGCTTACCGGCATTTTTGCTCAATTATACTGTTAATGGTGCGAAAACCTGGTATTCCCGTAGTAACAAATCGCAGGAAAACCAGTTTGTCAGCCTGCAAAGCGGCGTCAATCTTGGTGCATGGCGTGTCCGTAATTTCTCGACATACAGCCGTAACGGCGGAGAGAGTAACTGGTCGAATGTGAAAAACTATGTTGAGCGCAATGTTCAGTCTCTGCATTCCCGCCTGACCCTGGGTGATACGGCAACATCCGGTGATGTGTTCGAATCTGTTCCTTTCCGGGGAGTACGGATGTCATCTGATGATGCGATGCTGCCTGCCGGTCAGCGTGGTTTTGCCCCGGTTGTCCGTGGTATTGCGCAGAGCAGCGCGCAGGTTACTATTCGTCAGAATGGCTACGTTATTTATCAGACCTATGTGGCTCCCGGTCCGTTTGAAATTGCAGATCTGTACCCGTCTTCATACAGCGGTAATCTGGATGTGACAATTGAAGAAGAAGATGGCCGTGAGCGTACATTTGTGGTGCCGTTCTCTTCATTAGCCATGATGCAGCGTGAGGGCAGCCTGAAATATTCCCTGAACCTCGGTGAGTACCGTACCGGCACGGAAAATACCAAAGAGCCGCTCTTTTTTGAAGGCTCCGCTGCATACGGTATGCCGCTCAACACCACATTGTACGGCGGCACAATTTATTCGTCTGATTATCAGGCGTATTCTCTGGGCGCCGGTCTGAATTTAGGTCGCTTCGGTGCATTATCTGTCGATGCGATTCACGCTGTCACCACACAGACTGCGCGTGATGAAAAAGAAAAAGGGCAGTCATACCGCTTTCAGTACTCGAAAAGTATGATGCAAACCGGCACAACGCTGGCGCTGGCAGGATATCGCTACTCAACGCAAGGGTATTACGACTTTGCAGAGGCGAATGAAAATAATGGATTAAGTGCCCGTTATAACAAACGCACCCGTATTCAGGCCGATGTCAGTCAGTCCCTGGGTGATACAGCCGGCAGCCTGTATTTCTCTGCATACCAACAGAACTTCTGGGGGCAGGACGGGGAAGAGCGTACGGTTAACACCGGTTACAGCAATTCATTCCGCCGGGTGAATTACAGCGTTGCATACACCTATACAGATACCCCGGCAACGGATAAAGCGGACCATCAGTTTGCCGTGAATATCAGTATCCCGTTGGGTGGCAGCAATAATTATTCGCTTATCAGCAGTATGACGACGTCCCGCGATGGCGGAACTACTGCGATGGCAGGTTTCAGCGGCAGCGCACTTGAAAATAATGCACTGAGCTATTCGGTTCAGCAGGGCTATGACTTCCGTCAGCACAATAACAGCGGAAATGCCGGGCTCTCTTACCGTGGTGAAAAAGGTTTTATGAATGCCGGTTATAACTACGGAGACAACAGTCAGCGGGTTAATTACGGCGTGCAGGGGGGCGTAGTGGTTCATCCATACGGCGTGACACTCTCTCAGCCGCTGGGTGAAACCATTGCTCTGGTCCGGGCGCCCGGCGCTGCGGGTGTTATCGTTCAGAACAAAAATGGCGTAAAAACAGATTCCCGTGGCTATGCCGTTATTCCTTCAGTGACTGCCTATACAAAGAATGATGTTGCATTAAATATTAACGGGATGGATGAGAATGTTGAACTGATGAACAACAGTACAACGGTTGTCCCGACACGCGGTGCGGTTGTATTAGCAGATATGCAGACCCGCATCGGCTCACGTCTTCTGCTGAAACTGACCCGTCAGGGAAATGCATTACCTTTCGGCGCAATAGCCTCAGATGCAGACAGTGATAATAGTGGGATTGTGGATGAAAACGGTGTTGTTTACCTCAGTGGTATGCCGGACAGCGGCAAGGTCAATGTGAAATGGGGCTCGCGTCCCGATGAGCAATGCACCGCAGATTACGCGCTGACCGCCGGGCAGTCAGAGCAGATTGTTAAGCAGGTCACGGCGCAGTGCCGGTAATTTTGAAACAGGAAAACAACAGATGAAAACAGTGAAAAACAACAGAACAA