Homologs in group_124

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10 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09115 FBDBKF_09115 81.4 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
FBDBKF_10790 FBDBKF_10790 42.1 Morganella morganii S1 - Heat shock protein E
EHELCC_10295 EHELCC_10295 81.4 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_15125 EHELCC_15125 42.1 Morganella morganii S2 - Heat shock protein E
NLDBIP_10640 NLDBIP_10640 81.4 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_14955 NLDBIP_14955 42.1 Morganella morganii S4 - Heat shock protein E
LHKJJB_10715 LHKJJB_10715 81.4 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_14390 LHKJJB_14390 42.1 Morganella morganii S3 - Heat shock protein E
HKOGLL_13010 HKOGLL_13010 42.1 Morganella morganii S5 - Heat shock protein E
HKOGLL_13775 HKOGLL_13775 81.4 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC

Distribution of the homologs in the orthogroup group_124

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_124

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P33341 0.0 575 39 12 821 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P21647 1.15e-148 461 33 18 856 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P75857 3.34e-122 392 33 22 843 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 6.76e-122 392 32 22 843 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P30130 2.77e-117 380 30 19 860 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P33129 3.35e-117 379 33 24 863 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P46009 3.29e-116 377 30 25 853 3 focD Outer membrane usher protein FocD Escherichia coli
P37924 1.63e-113 369 31 18 834 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45998 7.79e-112 364 30 17 821 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 1.19e-110 361 30 14 793 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 6.52e-110 359 30 14 793 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P77468 1.05e-108 357 30 18 838 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P43662 1.74e-108 355 30 22 831 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 2.04e-99 331 28 16 808 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P53517 2.11e-93 315 30 21 837 3 afaC Outer membrane usher protein AfaC Escherichia coli
P33410 1.11e-83 289 29 21 826 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P46005 5.58e-82 284 28 21 798 3 aggC Outer membrane usher protein AggC Escherichia coli
P15484 8.64e-79 277 30 16 675 3 None Outer membrane usher protein CS3-2 Escherichia coli
Q56983 1.93e-77 271 27 20 859 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.93e-77 271 27 20 859 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P26949 4.07e-77 270 27 22 816 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P33388 8.4e-75 263 28 22 781 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P33408 7.06e-65 236 26 19 758 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P76655 3.56e-57 214 25 28 828 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
Q8X5K8 2.7e-55 202 30 14 512 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P77196 2.61e-54 206 24 22 803 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P53514 6.11e-53 201 25 29 830 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
P46000 1.66e-49 191 27 21 701 3 fasD Outer membrane usher protein FasD Escherichia coli
P75750 7.73e-49 189 24 27 819 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P07110 5.61e-48 187 25 29 867 1 papC Outer membrane usher protein PapC Escherichia coli
P37868 3.18e-44 175 23 25 812 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K7 9.8e-44 166 31 9 342 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P12050 4.38e-43 171 25 31 765 3 fanD Outer membrane usher protein FanD Escherichia coli
P53512 5.36e-43 171 22 18 772 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 2e-42 169 22 19 824 3 cssD Outer membrane usher protein CssD Escherichia coli
P45420 3.46e-32 137 26 40 821 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P06970 7.73e-32 137 23 32 867 3 faeD Outer membrane usher protein FaeD Escherichia coli
Q7DBJ9 2.44e-24 109 25 10 366 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 1.39e-22 104 26 10 366 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10835
Feature type CDS
Gene -
Product fimbria/pilus outer membrane usher protein
Location 302712 - 305252 (strand: -1)
Length 2541 (nucleotides) / 846 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_124
Orthogroup size 11
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MLRHIIRDISPQKVSAQIRLLSLVPLLFSTPAQTAGFNTNFLYGDSAKADLSRFDRDDTFPDGQYTIEISVNGEWKGRFPLMLSQSGQSVFIAQDDIARLGLRKTEIPAQPDEDGYVALDTLVPPGSYTLNIGQFQLALNVPQAMLDTVLKGYVDPALWDQGVNAAIVSYNANYYHATTKNDGSDNDNAYLTLNSGLNLAGWQFRDQSSLTYTCDQGAQWDTNTRYLQRGFPSIKSDLRAGDSYTSNELFESVRFRGAGLKTDIRMYPDAWQGFSPVVRGVAQTNALVKIYQDNQLIWQQSVPPGPFVVDTLLPTGSGGDLQVEVNEADGQINHFLVPFSAVPNMLKEGLFKYELNAGEVQLTDNPYHPGFAQLNLQYGINNTLTGYGGVIAAENYQAFLLGSGFNLPVGALSVDVTHSDARFSSPSPRFRGQSYKMAYSRFIHQTNTNFSLAAYRYSTSGYFSLSDAVQYQNQLNRQDSAGELPADDRSFRQRSTFNVNINQRLGGDYGSVYLAGTLRDYWGGQGSTREYQTGYANNWQDINYTISAGRVSYNRSNNSTSDNNHNNNEETRVNLTLSVPFTLSGNKVYLTANSMTEQGRYRNSNIGLSGAAGKSNSLNYNVNMAHQPVTGTTISTSAAYRTAPVTLNASYSESGQYRQLGAGATGSLVAWSGGVLTANQPGETFAIVNVPGTANAIVNNDNNITTDTQGRVLVPYLSAYRKNAIILDASQAPENAAELMGNVQDIVPYAGAVTLINFKTDARQEFYLRAVRHNGKPLPFGTEVTDGQHNSIGYVGQNSLIYIRSETRPAYIDVRLTDNDSGFCRVTLTATPQTSPLLCTEQGDIP

Flanking regions ( +/- flanking 50bp)

TCGGTGCTATCAACACCTATCCGCTCTCACTGAACTGATTATCTGTGCTGATGCTGCGCCATATCATCCGGGATATTTCCCCTCAGAAAGTATCAGCACAGATACGCCTGCTCTCTCTTGTACCGCTGCTGTTCAGCACGCCTGCACAGACCGCCGGATTTAATACCAATTTTCTTTACGGCGACTCTGCAAAAGCGGATTTATCGCGGTTTGACCGGGACGATACATTCCCTGACGGGCAATATACCATTGAGATAAGTGTCAATGGTGAATGGAAAGGTCGCTTTCCGCTGATGCTGAGTCAGAGCGGACAGTCTGTCTTTATTGCGCAGGATGATATCGCCAGGCTGGGGCTGCGTAAGACAGAAATCCCGGCACAGCCGGATGAAGATGGCTATGTTGCACTGGATACCCTGGTGCCACCCGGCAGCTATACGCTGAATATCGGTCAGTTTCAGCTGGCACTGAATGTTCCGCAGGCCATGCTTGATACCGTGCTCAAAGGGTATGTGGACCCGGCGTTATGGGATCAGGGGGTCAATGCCGCAATAGTGAGTTATAACGCCAATTATTATCATGCGACCACAAAAAATGACGGCAGCGATAACGATAATGCGTATCTGACGCTTAACAGCGGGCTGAACCTGGCGGGTTGGCAATTTCGGGATCAATCCTCTCTGACCTACACCTGCGACCAGGGCGCTCAGTGGGATACCAATACCCGCTATCTGCAACGGGGATTCCCGTCGATAAAATCTGACCTGCGGGCAGGTGACAGCTATACCTCCAATGAACTGTTTGAGTCTGTCCGCTTTCGCGGCGCGGGGCTGAAAACAGATATCCGCATGTATCCCGATGCGTGGCAGGGCTTCTCTCCGGTTGTGCGCGGCGTGGCACAAACCAATGCGCTGGTTAAAATCTATCAGGATAACCAGTTGATCTGGCAGCAAAGTGTGCCACCGGGTCCCTTTGTGGTTGATACCCTGCTGCCGACCGGCTCCGGGGGCGATTTACAGGTGGAAGTTAATGAAGCCGACGGACAGATCAATCACTTTTTAGTGCCGTTCTCCGCCGTGCCGAATATGTTAAAAGAAGGTCTGTTCAAATATGAACTGAATGCCGGTGAAGTGCAGCTGACAGATAATCCTTATCATCCGGGCTTTGCACAACTGAATCTGCAATATGGCATCAACAATACCCTCACCGGTTACGGTGGTGTGATCGCGGCAGAAAATTATCAGGCATTTTTGCTCGGCAGCGGATTTAATCTGCCTGTGGGTGCGTTGTCTGTGGATGTCACTCACTCTGATGCCCGGTTCTCTTCCCCCTCTCCGCGTTTTCGCGGACAGAGCTACAAAATGGCGTACAGCCGGTTTATTCATCAGACCAATACTAATTTTTCTCTCGCGGCTTACCGTTATTCCACCAGCGGTTATTTCAGTTTATCGGATGCCGTGCAATATCAGAATCAGCTTAACCGGCAGGACAGCGCCGGTGAATTACCGGCAGACGATCGCAGCTTTCGTCAGCGCAGTACATTTAATGTCAATATCAATCAGCGCCTCGGGGGGGATTACGGTTCCGTCTATCTCGCCGGAACACTGCGTGATTACTGGGGCGGACAAGGCAGCACCCGTGAATACCAGACCGGCTACGCCAATAACTGGCAGGATATCAATTACACAATCAGTGCCGGGCGGGTCAGTTATAACCGGAGCAATAACAGCACTTCAGATAATAATCACAATAATAATGAAGAAACCAGGGTGAACCTGACGCTCTCAGTGCCGTTCACGCTGTCCGGCAACAAAGTGTATCTGACCGCCAACAGCATGACTGAACAGGGGCGCTACCGGAACAGTAATATCGGACTGAGCGGTGCGGCGGGTAAGAGTAACTCACTGAACTATAATGTAAATATGGCACATCAGCCCGTTACCGGCACAACCATCAGCACCAGTGCAGCTTACCGCACCGCACCGGTAACACTGAATGCGTCTTACAGTGAATCAGGGCAGTACCGCCAGCTTGGTGCCGGTGCAACCGGCAGTCTGGTTGCCTGGTCCGGCGGTGTACTCACGGCAAATCAGCCGGGAGAAACCTTTGCGATAGTCAATGTACCGGGCACAGCAAACGCCATCGTTAATAATGACAACAATATCACCACCGACACGCAGGGTCGGGTATTGGTACCGTATCTGTCCGCTTACCGTAAAAATGCCATTATTCTGGATGCCTCTCAGGCACCGGAGAACGCGGCTGAACTGATGGGAAATGTGCAGGATATCGTCCCTTACGCAGGCGCGGTGACACTTATCAATTTCAAAACGGATGCCCGGCAGGAGTTTTATCTGCGCGCTGTCCGTCATAACGGAAAACCATTACCGTTCGGAACAGAAGTGACTGACGGGCAGCATAACAGCATCGGTTATGTCGGGCAGAACAGCCTCATATATATAAGAAGCGAAACACGCCCGGCATACATTGATGTCCGGCTGACAGATAACGACAGCGGATTTTGCCGGGTCACACTCACCGCAACGCCGCAAACCTCACCTCTTCTCTGTACTGAACAAGGCGATATCCCCTGATGCTCAGAAAATGTTACTTTTTCGCCGCTCTTCTGATGCTGCTGACCAGC