Homologs in group_1454

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09255 FBDBKF_09255 89.3 Morganella morganii S1 mscS Small-conductance mechanosensitive channel
EHELCC_10155 EHELCC_10155 89.3 Morganella morganii S2 mscS Small-conductance mechanosensitive channel
NLDBIP_10500 NLDBIP_10500 89.3 Morganella morganii S4 mscS Small-conductance mechanosensitive channel
LHKJJB_10855 LHKJJB_10855 89.3 Morganella morganii S3 mscS Small-conductance mechanosensitive channel
HKOGLL_13915 HKOGLL_13915 89.3 Morganella morganii S5 mscS Small-conductance mechanosensitive channel
PMI_RS10665 PMI_RS10665 59.8 Proteus mirabilis HI4320 - mechanosensitive ion channel family protein

Distribution of the homologs in the orthogroup group_1454

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1454

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEB5 3.08e-154 439 61 0 336 1 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli (strain K12)
P0AEB6 3.08e-154 439 61 0 336 3 ynaI Low conductance mechanosensitive channel YnaI Escherichia coli O157:H7
O25170 6.34e-45 166 37 6 263 3 HP_0415 Uncharacterized MscS family protein HP_0415 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZKG7 2.38e-44 164 37 6 263 3 jhp_0969 Uncharacterized MscS family protein jhp_0969 Helicobacter pylori (strain J99 / ATCC 700824)
O66994 3.08e-39 145 31 3 250 3 aq_812 Uncharacterized MscS family protein aq_812 Aquifex aeolicus (strain VF5)
O07594 4.98e-32 126 31 3 222 3 yhdY Uncharacterized MscS family protein YhdY Bacillus subtilis (strain 168)
Q8L7W1 9.88e-32 129 27 7 327 1 MSL3 Mechanosensitive ion channel protein 3, chloroplastic Arabidopsis thaliana
Q56X46 2.65e-27 116 30 3 210 2 MSL2 Mechanosensitive ion channel protein 2, chloroplastic Arabidopsis thaliana
Q8VZL4 3.92e-26 112 28 2 237 1 MSL1 Mechanosensitive ion channel protein 1, mitochondrial Arabidopsis thaliana
Q57634 4.15e-23 101 33 4 231 1 MJ0170 Small-conductance mechanosensitive channel MscMJ Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q58543 5.35e-22 98 31 4 185 1 MJ1143 Large-conductance mechanosensitive channel MscMJLR Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O28726 6.86e-20 91 27 5 256 3 AF_1546 Uncharacterized MscS family protein AF_1546 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P0C0S3 1.75e-15 79 24 6 265 3 mscS Small-conductance mechanosensitive channel Shigella flexneri
P0C0S1 1.75e-15 79 24 6 265 1 mscS Small-conductance mechanosensitive channel Escherichia coli (strain K12)
P0C0S2 1.75e-15 79 24 6 265 3 mscS Small-conductance mechanosensitive channel Escherichia coli O157:H7
Q89AB5 3.1e-15 78 27 3 199 3 bbp_402 Uncharacterized MscS family protein bbp_402 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O52401 3.12e-15 78 27 5 227 3 mscS Small-conductance mechanosensitive channel Edwardsiella ictaluri (strain 93-146)
P57527 2.98e-14 75 27 4 224 3 BU452 Uncharacterized MscS family protein BU452 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8R6L9 3.06e-13 72 27 7 205 1 mscS Small-conductance mechanosensitive channel Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q8K9B1 3.3e-13 72 25 3 220 3 BUsg_437 Uncharacterized MscS family protein BUsg_437 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q55717 1.8e-12 70 26 4 219 3 slr0639 Uncharacterized MscS family protein slr0639 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q57362 1.72e-10 66 26 7 208 1 HI_0195.1 Uncharacterized MscS family protein HI_0195.1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAT5 1.54e-09 62 24 6 245 3 ybdG Miniconductance mechanosensitive channel YbdG Shigella flexneri
P0AAT4 1.54e-09 62 24 6 245 1 ybdG Miniconductance mechanosensitive channel YbdG Escherichia coli (strain K12)
P77338 6.35e-09 61 28 8 217 1 mscK Mechanosensitive channel MscK Escherichia coli (strain K12)
O34897 1.15e-08 58 22 6 221 2 ykuT Uncharacterized MscS family protein YkuT Bacillus subtilis (strain 168)
P42531 2.83e-08 58 35 2 98 4 Cgl1270 Uncharacterized protein Cgl1270/cg1434 Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P39285 6.79e-08 58 22 7 264 1 mscM Miniconductance mechanosensitive channel MscM Escherichia coli (strain K12)
P0DKS1 2.13e-06 52 26 3 186 3 mscS Small-conductance mechanosensitive channel Wigglesworthia glossinidia brevipalpis
T0DVE4 0.000103 47 28 2 157 1 mscS Small-conductance mechanosensitive channel Helicobacter pylori (strain UM084)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10715
Feature type CDS
Gene -
Product mechanosensitive ion channel family protein
Location 272515 - 273561 (strand: 1)
Length 1047 (nucleotides) / 348 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1454
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00924 Mechanosensitive ion channel, beta-domain
PF21082 Mechanosensitive ion channel MscS, C-terminal
PF21088 Mechanosensitive ion channel, transmembrane helices 2/3

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0668 Cell wall/membrane/envelope biogenesis (M) M Small-conductance mechanosensitive channel

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K16052 MscS family membrane protein - -

Protein Sequence

MLTEEFLSNNVLSLIVLVICILGSVGLMIYNRRREKGKHATLVHISQLVMWALCVVILGDFTEQGIVYFQWRFITADTVAMICTTLIVLLLIRKLFLMINRLAQAQIARGSDITSAHIISRVLKILIVIVVFLLYGEHFGMSLSGLMTFGGIGGIAIGMAGKDILSNLFSGIMLYFDRPFKIGDWVSSPDRQIEGTVVEIGWRITKIITFDHRPLYIPNSLFSSISVENPGRMTNRRIKTTIGLRYEDADKIAPVVSDIRAMLKADTTIDQHQTMLVYFDEFGDSALNIMVYCFTKTTVWADWLAAQQAVYLKIIAIVHQHGADFAFPSRTLYMERNSAPASREPAGM

Flanking regions ( +/- flanking 50bp)

TTTCCCGGCGAAATTCATCAGAAGGAGAGGAATAATGATAAGGAGTTGCTGTGTTAACTGAAGAGTTTCTCTCCAATAATGTACTCAGCCTGATTGTGTTGGTTATCTGTATCTTAGGCTCTGTTGGGTTGATGATTTACAACCGCCGGCGGGAAAAGGGTAAACATGCCACATTGGTACATATTTCCCAGCTTGTGATGTGGGCGCTGTGTGTGGTGATCCTAGGGGATTTTACAGAGCAGGGAATTGTCTATTTTCAGTGGCGTTTTATCACCGCTGATACCGTGGCGATGATTTGTACCACGCTGATCGTATTGCTGTTGATCCGTAAATTATTCCTGATGATCAACCGCCTGGCGCAGGCACAGATAGCTCGTGGCAGTGATATTACCTCCGCGCACATTATTTCCCGCGTGCTGAAAATTCTGATCGTGATTGTGGTTTTTCTGCTCTACGGTGAACATTTCGGCATGAGTCTATCCGGGTTGATGACGTTCGGCGGGATCGGCGGTATTGCTATCGGGATGGCAGGGAAGGACATTCTAAGTAATCTCTTTTCCGGTATTATGCTCTATTTTGATCGTCCGTTTAAAATCGGTGACTGGGTCAGTTCGCCTGACCGGCAGATTGAAGGCACGGTGGTGGAGATTGGCTGGCGCATCACAAAAATTATTACCTTTGATCACCGCCCGCTCTATATTCCTAACTCCCTGTTTTCTTCCATCAGTGTGGAAAACCCGGGGCGCATGACAAACCGGCGGATCAAAACCACCATTGGTCTGCGCTATGAAGATGCCGATAAAATTGCGCCGGTTGTCAGTGATATCCGCGCCATGCTGAAAGCCGATACAACTATTGATCAGCACCAGACCATGCTGGTCTATTTTGATGAATTCGGTGATTCGGCACTCAATATCATGGTCTATTGCTTCACAAAAACCACCGTCTGGGCAGATTGGCTGGCGGCACAGCAGGCGGTTTATTTGAAAATTATTGCTATTGTTCATCAGCACGGCGCAGATTTCGCTTTCCCGAGCAGAACTCTGTATATGGAACGCAATTCCGCTCCTGCAAGCCGCGAACCTGCGGGAATGTGATCCGGCACCTTGCACTGAATACCCTGTTTCCGTTATCGTGCCGCCGGTTA