Homologs in group_1461

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09345 FBDBKF_09345 73.4 Morganella morganii S1 sctW type III secretion system gatekeeper subunit SctW
EHELCC_10065 EHELCC_10065 73.4 Morganella morganii S2 sctW type III secretion system gatekeeper subunit SctW
NLDBIP_10410 NLDBIP_10410 73.4 Morganella morganii S4 sctW type III secretion system gatekeeper subunit SctW
LHKJJB_10945 LHKJJB_10945 73.4 Morganella morganii S3 sctW type III secretion system gatekeeper subunit SctW
HKOGLL_14005 HKOGLL_14005 73.4 Morganella morganii S5 sctW type III secretion system gatekeeper subunit SctW
PMI_RS13280 PMI_RS13280 33.2 Proteus mirabilis HI4320 sctW type III secretion system gatekeeper subunit SctW

Distribution of the homologs in the orthogroup group_1461

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1461

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P35671 1.58e-21 97 29 7 326 4 invE Invasion protein InvE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q56052 1.64e-21 97 29 7 326 3 invE Invasion protein InvE Salmonella typhi
Q04640 1.27e-20 94 25 11 333 1 mxiC Protein MxiC Shigella flexneri

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10620
Feature type CDS
Gene sctW
Product type III secretion system gatekeeper subunit SctW
Location 253889 - 254941 (strand: 1)
Length 1053 (nucleotides) / 350 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1461
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07201 HrpJ-like domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K22511 type III secretion system protein - -

Protein Sequence

MINGISARPLIQSETAQVKTSGSAATEPQSAENAAAHDAEQMMDMMDDMSMALAQFNRRQYGKEEQISQMPASDSKRGGDAGENKLDKVVKWFTASGRSLREFLDYVRALFPDPSDYVMALRSLMRKLPFSAEEAADIDTEIEQLLYGDFAQETRAGINVALKIRQYAPVTQLECSQLRMVYRSYISWKFDILYLYKVWLEQYKKSRVKSLLHYVRDALVCDMAAALPSCSHHSEFGELTSRLYSLNQLISLTDMFYQKIASLNCSEPALADETTINQLIISGLGDADAFRNEIKTLLSSVESDKNQPLILQRFIAIFSEIPDTLFLQEAQKETIVSFLKVHMSEIIHTL

Flanking regions ( +/- flanking 50bp)

CAATAAACAAGGGTTGTTAATGATGGAAAATCTCCGGGGAGATTACCATCATGATTAACGGCATTTCTGCCCGCCCGCTGATTCAGTCTGAAACGGCGCAGGTCAAAACCTCAGGGAGCGCTGCAACAGAGCCGCAATCTGCTGAGAATGCCGCAGCGCATGATGCGGAACAAATGATGGACATGATGGATGATATGTCTATGGCGCTGGCTCAGTTTAACCGCCGTCAGTACGGCAAAGAAGAACAGATAAGTCAGATGCCGGCATCTGACAGTAAGCGCGGCGGTGATGCCGGAGAAAATAAGCTGGATAAGGTAGTGAAATGGTTTACGGCATCCGGGCGCTCTCTGCGTGAGTTTCTGGATTATGTACGCGCTTTGTTTCCGGATCCCAGTGATTATGTGATGGCTCTGCGCTCATTGATGCGCAAACTGCCGTTTTCCGCAGAAGAAGCCGCTGATATTGATACTGAAATTGAGCAGTTACTGTACGGTGATTTTGCACAGGAAACGCGGGCCGGGATCAATGTTGCACTGAAAATCCGTCAGTATGCACCGGTTACACAGCTTGAATGCTCTCAGTTGCGAATGGTGTACCGCAGTTATATCAGCTGGAAATTCGATATCCTGTATCTCTATAAGGTTTGGCTGGAGCAATATAAAAAGAGCCGTGTCAAAAGTCTGCTGCATTATGTCCGCGATGCTCTGGTGTGTGATATGGCGGCGGCTCTGCCGAGTTGCAGCCATCACAGTGAATTCGGGGAACTGACATCCCGCTTGTATTCGCTGAATCAGCTTATTTCCCTGACAGATATGTTTTATCAGAAAATTGCCTCACTGAATTGTTCTGAACCGGCACTGGCAGATGAAACAACCATTAACCAGCTGATTATTTCTGGTTTGGGTGATGCAGATGCATTTCGCAACGAAATAAAAACACTTTTATCTTCGGTTGAGAGTGATAAAAATCAGCCGCTGATTTTACAGCGTTTTATCGCAATATTTAGTGAAATACCGGATACCCTTTTTTTGCAGGAAGCACAGAAAGAAACCATCGTTTCTTTTCTGAAAGTACACATGAGTGAAATTATTCATACTCTATAACTTTTAATGGCAACGGATTGCTATGCTGACATCATTTATTAACGCGGTAA