Homologs in group_1470

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09430 FBDBKF_09430 83.5 Morganella morganii S1 yidZ HTH-type transcriptional regulator YidZ
EHELCC_09980 EHELCC_09980 83.5 Morganella morganii S2 yidZ HTH-type transcriptional regulator YidZ
NLDBIP_10325 NLDBIP_10325 83.5 Morganella morganii S4 yidZ HTH-type transcriptional regulator YidZ
LHKJJB_11030 LHKJJB_11030 83.5 Morganella morganii S3 yidZ HTH-type transcriptional regulator YidZ
HKOGLL_14090 HKOGLL_14090 83.5 Morganella morganii S5 yidZ HTH-type transcriptional regulator YidZ
PMI_RS06085 PMI_RS06085 51.7 Proteus mirabilis HI4320 yidZ HTH-type transcriptional regulator YidZ

Distribution of the homologs in the orthogroup group_1470

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1470

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q3YWK2 1.24e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Shigella sonnei (strain Ss046)
Q31UW5 1.24e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 4 (strain Sb227)
B2TUR4 1.24e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I3U4 1.24e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain SE11)
B1IX27 1.24e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A6H3 1.24e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O9:H4 (strain HS)
B7L852 1.24e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain 55989 / EAEC)
A7ZTR6 1.24e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O139:H28 (strain E24377A / ETEC)
B7NF28 1.4e-109 324 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P31463 2.93e-109 323 50 0 312 1 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12)
B1X9U0 2.93e-109 323 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / DH10B)
C4ZYY9 2.93e-109 323 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli (strain K12 / MC4100 / BW2952)
B5YXB5 5.64e-109 322 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XB23 5.64e-109 322 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O157:H7
Q8ZKY0 7.49e-109 322 50 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B4TAV5 7.49e-109 322 50 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella heidelberg (strain SL476)
Q5PKV5 2.28e-108 321 50 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8FBU9 2.35e-108 321 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Z2P0 5.27e-108 320 49 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella typhi
A8ACM1 8.8e-108 319 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
B4TN13 1.29e-107 319 49 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella schwarzengrund (strain CVM19633)
B4SYB4 1.29e-107 319 49 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella newport (strain SL254)
B5QUQ7 1.29e-107 319 49 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella enteritidis PT4 (strain P125109)
B5FN16 1.29e-107 319 49 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella dublin (strain CT_02021853)
B5EYX8 1.29e-107 319 49 0 292 3 yidZ HTH-type transcriptional regulator YidZ Salmonella agona (strain SL483)
Q328Z9 1.75e-107 319 50 0 312 3 yidZ HTH-type transcriptional regulator YidZ Shigella dysenteriae serotype 1 (strain Sd197)
P10183 6.87e-22 96 27 8 329 3 nahR HTH-type transcriptional activator NahR Pseudomonas putida
P52698 9.78e-17 83 26 9 332 3 phcA HTH-type transcriptional regulator PhcA Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q9EXL7 1.06e-14 76 24 8 318 3 nagR HTH-type transcriptional activator NagR Ralstonia sp.
P55733 2.05e-13 73 27 3 206 3 syrM2 HTH-type transcriptional regulator SyrM 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P55359 8.55e-13 71 24 9 312 3 nodD1 Nodulation protein D 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P77746 1.47e-12 70 41 1 93 2 ybdO Uncharacterized HTH-type transcriptional regulator YbdO Escherichia coli (strain K12)
P12232 3.03e-12 69 24 9 312 3 nodD1 Nodulation protein D 1 Bradyrhizobium japonicum
P52679 1.23e-11 67 24 11 321 1 pcpR PCP degradation transcriptional activation protein Sphingobium chlorophenolicum
Q9ZN79 1.88e-10 64 24 9 318 3 linR HTH-type transcriptional regulator LinR Sphingobium indicum (strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC 101211 / UT26S)
P30979 4.1e-10 63 39 0 78 3 ybeF Uncharacterized HTH-type transcriptional regulator YbeF Escherichia coli (strain K12)
P18561 4.12e-10 63 23 10 321 3 syrM HTH-type transcriptional regulator SyrM Rhizobium meliloti (strain 1021)
Q08812 5.34e-09 60 24 12 305 3 syrM HTH-type transcriptional regulator SyrM Rhizobium etli
P50331 7e-09 59 23 10 318 3 nodD1 Nodulation protein D 1 Neorhizobium galegae
P50324 9.58e-09 59 26 13 311 3 nodD2 Nodulation protein D 2 Bradyrhizobium elkanii
P03031 1.79e-08 58 24 11 316 3 nodD1 Nodulation protein D 1 Rhizobium meliloti (strain 1021)
P08719 1.81e-08 58 24 11 316 3 nodD2 Nodulation protein D 2 Rhizobium meliloti (strain 1021)
P04681 2.02e-08 58 22 10 318 3 nodD Nodulation protein D Rhizobium leguminosarum bv. viciae
P23719 3.47e-08 57 23 8 313 3 nodD2 Nodulation protein D 2 Rhizobium leguminosarum bv. phaseoli
P50327 4.74e-08 57 22 8 317 3 nodD1 Nodulation protein D 1 Bradyrhizobium sp. (strain NC92)
P12233 8.21e-08 56 24 10 317 3 nodD2 Nodulation protein D 2 Bradyrhizobium japonicum
P23718 8.6e-08 56 23 9 316 3 nodD1 Nodulation protein D 1 Rhizobium leguminosarum bv. phaseoli
P10151 1.09e-07 56 21 13 321 1 leuO HTH-type transcriptional regulator LeuO Escherichia coli (strain K12)
P23190 1.14e-07 56 22 9 316 3 nodD3 Nodulation protein D 3 Rhizobium meliloti (strain 1021)
P55619 1.76e-07 55 22 7 319 1 syrM1 HTH-type transcriptional regulator SyrM 1 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P55700 1.89e-07 55 23 10 317 1 nodD2 Nodulation protein D 2 Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P46924 4.7e-07 54 22 14 322 3 leuO Probable HTH-type transcriptional regulator LeuO Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P16556 5.93e-07 53 22 8 314 3 nodD Nodulation protein D Rhizobium leguminosarum
Q57748 6.18e-07 53 25 11 256 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q45264 7.01e-07 53 22 8 312 3 nodD1 Nodulation protein D 1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q02876 1.46e-06 52 23 11 315 3 nodD1 Nodulation protein D 1 Rhizobium tropici
P50323 1.52e-06 52 23 6 241 3 nodD1 Nodulation protein D 1 Bradyrhizobium elkanii
P04680 2.45e-06 52 21 8 317 3 nodD Nodulation protein D Rhizobium leguminosarum bv. trifolii
P04682 2.09e-05 49 22 10 315 3 nodD Nodulation protein D Bradyrhizobium sp. (strain ANU 289)
P23720 6.72e-05 47 37 1 78 3 nodD3 Nodulation protein D 3 Rhizobium leguminosarum bv. phaseoli
Q45263 0.000133 46 23 7 276 3 nodD2 Nodulation protein D 2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P70773 0.000202 46 42 1 64 3 argP HTH-type transcriptional regulator ArgP Aeromonas salmonicida

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10480
Feature type CDS
Gene yidZ
Product HTH-type transcriptional regulator YidZ
Location 213681 - 214646 (strand: 1)
Length 966 (nucleotides) / 321 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1470
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MNKSLHRLDLNLLVILQYLLEERSVSLTAARLSVTPSAISKALTKLRTWFDDPLFIRSPQGLSPTPLMLRLESSLPEFLHAAKYISEIRDSENPKGIQFRLLMEAPLNLIMLHDLSVSILDSYPESVVSIRDWDYNSLSAVIAGEADIGLLGRESYPKSKETVSAIPDIVNFDVLFTDRPLAFIRRDHPVLNEDWTIDNLVKYPHISTEYGNRIPWALDDLLHDTGRSRQIRLSYSSFEQSLLMAAHPGHSLITCAPGYCLHYVTQFQLDLVCLPLPFDESLYRQLEIPFLMLWHKRNNHNSKISWLREKIRRSITDFIYS

Flanking regions ( +/- flanking 50bp)

TGCGATATTACTGAAACGGTATCCCGACAGCAGCAACGACAGCTCATTCAATGAATAAATCACTGCACCGACTGGATTTGAATTTACTTGTTATCCTTCAGTATCTGCTGGAGGAGCGCAGTGTCAGTTTGACCGCGGCAAGACTCTCGGTGACGCCCTCAGCTATCAGTAAGGCGCTGACAAAGTTGCGCACCTGGTTTGATGACCCGCTGTTTATCCGCAGCCCGCAGGGGCTGTCGCCGACACCGCTGATGCTGCGTCTGGAAAGCTCGTTACCGGAATTTTTACATGCCGCGAAATATATCTCGGAGATCCGTGACAGCGAAAACCCGAAAGGGATTCAGTTCCGTTTGCTGATGGAAGCGCCGCTCAACCTGATTATGCTGCATGACCTTTCTGTTTCTATCCTGGATAGCTATCCTGAATCTGTTGTCAGTATCCGCGACTGGGATTATAACTCACTCAGTGCGGTGATTGCGGGGGAGGCGGATATCGGTCTGCTCGGGCGTGAAAGTTACCCGAAATCAAAAGAGACGGTCAGTGCTATTCCTGACATTGTTAATTTTGACGTCCTGTTTACTGACCGCCCGCTGGCATTTATCCGGCGTGATCACCCTGTTCTGAATGAAGACTGGACGATTGATAACCTGGTGAAATACCCGCATATCAGTACCGAATACGGAAACCGCATTCCGTGGGCGCTGGATGATTTATTGCATGATACAGGGCGCTCACGGCAAATCAGGCTCTCTTATTCCTCTTTTGAACAATCATTGCTGATGGCAGCGCATCCCGGACATTCACTTATTACCTGTGCGCCCGGTTATTGTCTGCATTATGTCACTCAGTTTCAGCTGGATTTAGTCTGCCTGCCGCTTCCGTTTGATGAGTCACTGTACCGGCAGTTGGAGATCCCTTTCCTGATGCTCTGGCATAAGCGTAATAATCATAATTCCAAAATCAGCTGGCTGAGAGAAAAAATCCGCCGCAGTATTACTGATTTTATTTATTCATAAAATAAAATACAAGTTATCCGCGTTATATTTCTCTTCGGTAAATATAATAC