Homologs in group_3039

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18135 FBDBKF_18135 74.4 Morganella morganii S1 - Pilin (Type 1 fimbria component protein)
EHELCC_16835 EHELCC_16835 74.4 Morganella morganii S2 - Pilin (Type 1 fimbria component protein)
NLDBIP_17615 NLDBIP_17615 74.4 Morganella morganii S4 - Pilin (Type 1 fimbria component protein)
LHKJJB_17535 LHKJJB_17535 74.4 Morganella morganii S3 - Pilin (Type 1 fimbria component protein)
HKOGLL_17350 HKOGLL_17350 74.4 Morganella morganii S5 - Pilin (Type 1 fimbria component protein)

Distribution of the homologs in the orthogroup group_3039

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3039

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76499 1.94e-09 57 30 5 179 2 yfcP Uncharacterized fimbrial-like protein YfcP Escherichia coli (strain K12)
P75860 9.82e-08 52 27 6 151 2 ycbV Uncharacterized fimbrial-like protein YcbV Escherichia coli (strain K12)
Q04681 1.32e-07 52 25 4 152 1 pmfA Major fimbrial subunit Proteus mirabilis (strain HI4320)
Q8X5K5 8.7e-06 47 23 4 141 2 lpfA Probable major fimbrial subunit LpfA Escherichia coli O157:H7
P53521 1.19e-05 47 23 4 182 3 pmfF Putative minor fimbrial subunit PmfF Proteus mirabilis (strain HI4320)
P04740 8.37e-05 44 23 7 192 3 KS71A KS71A fimbrillin Escherichia coli
P13421 9.73e-05 44 26 6 179 1 smfA Fimbria A protein Serratia marcescens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10340
Feature type CDS
Gene -
Product fimbrial protein
Location 179338 - 179886 (strand: -1)
Length 549 (nucleotides) / 182 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3039
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MIFRPSALCALIFSAALSFSAGFIPAVNAADNLRVTGELYNDPCTLLPENKELLVDFSDVSLPDLYDGTEVSKSFSLVLSECDISDLNRFKIKFTGATSVELKEYLALDASSNAGGFAIGIKTESAALIPLNQFSNAINIAGNGENKIRFIAFLKVAPKALADKTIKYGAFNATAFLTIDYF

Flanking regions ( +/- flanking 50bp)

TCGCCCGGTCACTTTAGCGGAACCGGTACTGTGACTATGGAGTATTTCTGATGATATTTCGTCCGTCTGCTCTCTGTGCGCTGATATTCAGTGCCGCACTCTCTTTTTCAGCCGGTTTTATCCCTGCTGTAAATGCCGCAGATAATTTACGGGTCACGGGTGAGTTATATAATGACCCCTGTACATTATTACCTGAAAATAAAGAATTACTGGTTGATTTCAGTGATGTTTCACTGCCGGATCTTTATGACGGAACAGAAGTCAGTAAATCATTCTCTCTGGTTTTGTCTGAGTGTGATATCAGTGATCTGAACCGTTTTAAGATTAAATTTACCGGCGCGACCTCAGTGGAGCTGAAAGAATATCTTGCACTTGATGCTTCCAGTAATGCCGGGGGCTTTGCTATCGGTATCAAAACAGAATCCGCCGCCCTCATTCCGCTGAATCAGTTCTCCAATGCCATTAATATTGCCGGTAATGGTGAAAATAAAATCCGGTTTATCGCTTTTTTAAAAGTCGCACCTAAAGCACTGGCAGACAAAACTATTAAATATGGTGCATTTAATGCCACCGCATTCCTGACTATCGACTACTTCTGAGGCCGGTATGAAAAATATTATCCGTTATCTGAGTGTACTGACTGTGCTTT