Homologs in group_812

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03910 FBDBKF_03910 52.4 Morganella morganii S1 - Core-binding (CB) domain-containing protein
EHELCC_06625 EHELCC_06625 52.4 Morganella morganii S2 - Core-binding (CB) domain-containing protein
NLDBIP_06950 NLDBIP_06950 52.4 Morganella morganii S4 - Core-binding (CB) domain-containing protein
LHKJJB_06485 LHKJJB_06485 52.4 Morganella morganii S3 - Core-binding (CB) domain-containing protein
HKOGLL_04445 HKOGLL_04445 52.4 Morganella morganii S5 - Core-binding (CB) domain-containing protein
PMI_RS12670 PMI_RS12670 52.7 Proteus mirabilis HI4320 - integrase domain-containing protein

Distribution of the homologs in the orthogroup group_812

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_812

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10125
Feature type CDS
Gene -
Product integrase domain-containing protein
Location 134267 - 135145 (strand: -1)
Length 879 (nucleotides) / 292 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_812
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF12834 Phage integrase, N-terminal
PF12835 Integrase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4974 Replication, recombination and repair (L) L Site-specific recombinase XerD

Protein Sequence

MSKLTREMTMLAKQSGGSFKTVHDRIRIMDRFSRHLLALNIQIKDIRHLKSKHIESFIADRQSAGIALRSLQNEMSALRCVLRTAGRDKLAESERLTNKVLGLSGASRAGTKLAIPDDRFQAALQLAQARDEGFACTLQLARLLGLRSQEAVQCAASIKMWENRIHNSCSTITVVFGTKGGRPREVQIIDRDAVKQAIDNALRIVESRNGRLIDKPDLKTAMNYWRTHTARIGLTGRYSPHSLRYAWAQDAIAHYLSQGYSRTEARALTSMDLGHGDGRGRYVERVYTRKED

Flanking regions ( +/- flanking 50bp)

CAATCCATGCGCCGGAGAAATGCAGTCAGCTGAAATACAGGGAAATTCGTATGAGTAAATTAACCAGGGAAATGACCATGCTGGCGAAACAGTCCGGCGGCAGTTTCAAAACTGTGCATGACCGTATCCGGATTATGGATAGATTCAGCCGTCACCTTCTCGCGCTGAATATTCAGATTAAAGATATCCGCCATCTGAAATCAAAACATATCGAGAGCTTTATTGCAGATCGCCAATCGGCAGGAATTGCCCTGCGCTCACTGCAAAATGAAATGTCTGCACTGCGCTGCGTTCTGCGCACAGCAGGCAGAGATAAGCTGGCTGAATCAGAACGGCTGACCAATAAGGTGCTTGGATTAAGTGGTGCGAGCCGTGCCGGAACAAAGCTGGCAATCCCGGATGATCGCTTTCAGGCCGCACTGCAACTGGCTCAGGCGCGTGATGAGGGCTTTGCCTGTACCCTGCAACTCGCCCGCCTGTTAGGGCTGAGATCGCAGGAAGCAGTGCAGTGTGCGGCATCAATAAAAATGTGGGAAAACCGAATTCACAATTCCTGTTCCACCATCACTGTCGTGTTTGGTACAAAAGGCGGCCGCCCGCGGGAGGTACAGATTATCGATCGGGACGCCGTAAAGCAGGCGATAGATAACGCATTGCGGATTGTTGAAAGCCGCAACGGCAGACTGATTGATAAACCAGATCTAAAAACAGCGATGAATTACTGGCGCACGCATACCGCACGTATCGGACTGACCGGTCGCTACTCGCCGCACAGTCTGCGTTATGCATGGGCGCAGGATGCAATTGCGCATTATCTGTCGCAGGGCTATTCCCGCACGGAAGCCAGGGCGCTGACATCCATGGATCTGGGTCATGGCGATGGTCGCGGCCGCTATGTTGAACGCGTTTACACACGGAAAGAGGATTGATTATGACTGAATACAATTTACTGCGGGTTCGCGAGGTGATGAAAAAAACC