Homologs in group_1434

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08870 FBDBKF_08870 89.4 Morganella morganii S1 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
EHELCC_12655 EHELCC_12655 89.4 Morganella morganii S2 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
NLDBIP_12995 NLDBIP_12995 89.4 Morganella morganii S4 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
LHKJJB_13560 LHKJJB_13560 89.4 Morganella morganii S3 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
HKOGLL_11470 HKOGLL_11470 89.4 Morganella morganii S5 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH
PMI_RS17280 PMI_RS17280 58.1 Proteus mirabilis HI4320 ampH D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH

Distribution of the homologs in the orthogroup group_1434

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1434

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD70 6.83e-142 412 53 2 386 1 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH Escherichia coli (strain K12)
P0AD71 6.83e-142 412 53 2 386 3 ampH D-alanyl-D-alanine-carboxypeptidase/endopeptidase AmpH Escherichia coli O157:H7
Q54SB6 6.71e-15 80 23 17 401 3 DDB_G0282555 Beta-lactamase-like protein 3 Dictyostelium discoideum
P05193 3.19e-14 77 24 9 353 1 ampC Beta-lactamase Citrobacter freundii
Q48434 1.18e-13 75 24 8 329 1 blaCMY-2 Beta-lactamase CMY-2 Klebsiella pneumoniae
O53044 1.19e-13 75 24 8 329 3 blaCMY-4 Beta-lactamase CMY-4 Klebsiella pneumoniae
A8MY62 1.68e-13 75 28 9 261 1 LACTBL1 Putative beta-lactamase-like 1 Homo sapiens
P45460 3.71e-12 70 24 14 373 3 ampC Beta-lactamase Yersinia enterocolitica
Q54SB5 1.57e-11 69 25 10 319 3 DDB_G0282557 Beta-lactamase-like protein 4 Dictyostelium discoideum
Q6G6M9 6.11e-11 67 22 10 352 3 flp Protein flp Staphylococcus aureus (strain MSSA476)
Q8NUZ4 1.37e-10 66 22 10 352 3 flp Protein flp Staphylococcus aureus (strain MW2)
Q54VJ1 2.53e-10 65 26 9 269 3 DDB_G0280307 Beta-lactamase-like protein 2 Dictyostelium discoideum
P00811 3.58e-10 64 24 12 353 1 ampC Beta-lactamase Escherichia coli (strain K12)
Q6GDZ1 1.17e-09 63 21 10 352 3 flp Protein flp Staphylococcus aureus (strain MRSA252)
Q7A3Q5 1.73e-09 63 21 10 352 1 flp Protein flp Staphylococcus aureus (strain N315)
Q99RJ0 1.73e-09 63 21 10 352 3 flp Protein flp Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HDB2 1.84e-09 63 22 9 345 4 flp Protein flp Staphylococcus aureus (strain COL)
P85302 1.86e-09 62 23 11 351 1 ampC Beta-lactamase Pseudomonas fluorescens
Q9KJ74 3.05e-09 62 22 10 349 4 flp Protein flp Staphylococcus aureus
Q2FVH6 3.05e-09 62 22 10 349 4 flp Protein flp Staphylococcus aureus (strain NCTC 8325 / PS 47)
P94958 3.33e-09 61 24 12 346 3 ampC Beta-lactamase Morganella morganii
Q8XBJ0 8.05e-09 60 23 17 386 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Escherichia coli O157:H7
P77619 4.89e-08 58 24 10 278 1 yfeW Putative D-alanyl-D-alanine carboxypeptidase Escherichia coli (strain K12)
B5R4I5 6.7e-08 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella enteritidis PT4 (strain P125109)
Q8Z4S7 7e-08 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella typhi
C0PZ64 8e-08 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella paratyphi C (strain RKS4594)
A9N307 8e-08 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4T0K5 8e-08 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella newport (strain SL254)
B5FQG8 8e-08 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella dublin (strain CT_02021853)
Q57LN2 8e-08 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella choleraesuis (strain SC-B67)
Q8ZN80 8.59e-08 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B5BB26 8.98e-08 57 20 10 354 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella paratyphi A (strain AKU_12601)
Q5PCQ2 8.98e-08 57 20 10 354 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4TR50 1.03e-07 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella schwarzengrund (strain CVM19633)
B4TD53 1.18e-07 57 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella heidelberg (strain SL476)
P9WLZ3 2.41e-07 56 24 7 299 1 Rv1367c Protein Rv1367c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WLZ2 2.41e-07 56 24 7 299 4 MT1414 Uncharacterized protein MT1414 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
B5F0K5 2.72e-07 56 23 7 206 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella agona (strain SL483)
O05213 3.42e-07 55 23 9 284 1 amiE N-acetylmuramyl-L-alanine amidase Bacillus subtilis (strain 168)
P32959 4.46e-07 55 23 12 326 1 pbpE Penicillin-binding protein 4* Bacillus subtilis (strain 168)
Q5HH27 7.77e-07 54 20 7 302 2 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain COL)
Q2FZK3 7.77e-07 54 20 7 302 2 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q7A185 8.19e-07 54 20 7 302 3 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain MW2)
O50608 8.19e-07 54 20 7 302 1 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus
Q6GAF6 8.19e-07 54 20 7 302 3 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain MSSA476)
Q7A6A2 8.19e-07 54 20 7 302 1 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain N315)
Q7A2T0 8.19e-07 54 20 7 302 1 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain Mu50 / ATCC 700699)
P05364 8.22e-07 54 22 14 385 1 ampC Beta-lactamase Enterobacter cloacae
B5RCU8 1.09e-06 54 20 10 360 3 yfeW Putative D-alanyl-D-alanine carboxypeptidase Salmonella gallinarum (strain 287/91 / NCTC 13346)
Q9KX40 1.04e-05 50 25 6 211 1 estB Esterase EstB Burkholderia gladioli
Q6GI27 1.16e-05 50 21 4 209 3 fmtA Teichoic acid D-alanine hydrolase Staphylococcus aureus (strain MRSA252)
O69773 1.66e-05 50 20 11 372 3 ampC Beta-lactamase Providencia stuartii
P18539 2.15e-05 50 22 12 350 3 ampC Beta-lactamase Serratia marcescens
P24735 6.16e-05 48 20 11 359 1 ampC Beta-lactamase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A6WYS5 8.15e-05 48 26 12 273 3 dap D-aminopeptidase Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)
P17420 9.96e-05 47 26 6 225 4 fimD Putative fimbrial assembly protein FimD, serogroup D Dichelobacter nodosus
P17421 0.000305 46 25 5 189 4 fimD Probable fimbrial assembly protein FimD, serogroup H1 Dichelobacter nodosus
A0A2I1D2N1 0.000638 45 23 10 245 3 ungD' Unguisins hydrolase ungD' Aspergillus campestris (strain IBT 28561)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10075
Feature type CDS
Gene ampH
Product D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH
Location 123022 - 124245 (strand: -1)
Length 1224 (nucleotides) / 407 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1434
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00144 Beta-lactamase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1680 Defense mechanisms (V) V CubicO group peptidase, beta-lactamase class C family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18988 serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:3.4.16.4 3.4.21.-] - -

Protein Sequence

MSKLHRHIVRLLPFSLLAIALSACSSQPAKQAVSPAERPPLDWSIVDNSTTPLKLAPQLVDEIGEKIFSDTDARGMFMVVIDNKEIFHRSYGETRPGNGVKPRTDSLIRIASVSKLMTSEVLVKMADDGLVNLNDPLQKYTYEQTKVPAYNGKPIRLFHLASHTSILPREQPGGKWGRPVFTWPNHDQRWTWLKTTKLTAQPGTEAAYSNIAYDLLADALEKAGKRPYPELFRQYVTQPANMKDTTYNPSSAQCKRLMVGFKPSDCYSTLAAVGSGGVYSTPADMQKWMQGFLSSGHSARKATASKEQTIYFKRGHLNEIKGMDVAGEADGLGLGWVYLAPVGDIPAIYQKTGGGGGFNTYMAMIPEKNVGIFVVMTRKDGSKFSPLPNGVNDLVRSLADLHTRDFL

Flanking regions ( +/- flanking 50bp)

TCTCATATTCTTATGTTTTTATGCTTGCACGGAAGGCTTGTTAAATCATCATGAGTAAATTACACCGTCATATTGTGCGTCTGCTGCCTTTTTCATTATTGGCAATCGCTCTCTCCGCCTGTTCCTCACAGCCTGCGAAGCAAGCTGTTTCGCCCGCAGAACGCCCGCCTCTGGACTGGTCCATTGTTGATAACAGTACAACGCCGCTGAAACTGGCGCCGCAACTGGTGGATGAAATCGGGGAGAAAATTTTCTCAGACACAGACGCCCGCGGTATGTTTATGGTGGTGATTGATAACAAAGAGATTTTTCACCGCAGCTATGGTGAAACCCGTCCGGGTAATGGTGTCAAACCACGGACAGATTCGCTAATCCGTATTGCATCCGTCAGTAAACTGATGACCAGTGAAGTGCTGGTAAAAATGGCGGATGACGGGCTGGTGAATCTGAATGATCCGCTGCAAAAATACACGTACGAGCAGACAAAAGTTCCGGCTTATAACGGCAAGCCTATCCGCCTGTTTCATCTGGCAAGCCACACCAGTATTCTGCCGCGTGAACAGCCCGGCGGGAAATGGGGGCGCCCGGTGTTTACCTGGCCAAACCATGACCAGCGCTGGACATGGCTGAAAACAACAAAACTGACCGCCCAGCCGGGAACGGAAGCCGCCTATTCCAATATTGCGTACGACTTACTGGCAGATGCGCTCGAAAAAGCCGGAAAACGTCCTTATCCTGAGCTGTTCAGACAATATGTTACGCAGCCGGCAAACATGAAAGATACAACTTACAATCCTTCTTCCGCACAATGTAAGCGCCTGATGGTCGGTTTCAAGCCGAGTGATTGTTACAGCACGCTGGCGGCGGTTGGCAGCGGCGGGGTTTATTCCACACCGGCGGATATGCAGAAGTGGATGCAGGGTTTTCTCTCATCCGGACATTCAGCACGCAAAGCAACGGCCTCCAAAGAGCAGACTATCTATTTCAAGCGCGGACATCTTAATGAAATCAAAGGGATGGATGTAGCTGGTGAGGCTGACGGACTGGGGCTGGGCTGGGTGTATCTGGCACCTGTAGGGGATATCCCGGCGATTTACCAGAAAACCGGTGGCGGTGGTGGCTTTAATACCTATATGGCCATGATCCCGGAGAAAAATGTCGGTATCTTTGTGGTAATGACCCGTAAGGATGGCAGTAAATTCAGCCCGTTACCGAATGGTGTCAATGATTTGGTGCGCTCACTGGCGGATTTACATACCCGCGATTTTCTGTGAGAAATGCAGTTCATTGTGAATAAAACAACAACGCCGGTCAGCAAATACTG