Homologs in group_1416

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08750 FBDBKF_08750 96.1 Morganella morganii S1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
EHELCC_12775 EHELCC_12775 96.1 Morganella morganii S2 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
NLDBIP_13115 NLDBIP_13115 96.1 Morganella morganii S4 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
LHKJJB_13440 LHKJJB_13440 96.1 Morganella morganii S3 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
HKOGLL_11590 HKOGLL_11590 96.1 Morganella morganii S5 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
PMI_RS17155 PMI_RS17155 86.7 Proteus mirabilis HI4320 - peptidase U32 family protein

Distribution of the homologs in the orthogroup group_1416

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1416

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45527 0.0 611 86 0 331 1 ubiU Ubiquinone biosynthesis protein UbiU Escherichia coli (strain K12)
Q57555 1.09e-43 157 33 12 298 3 MJ0090 Uncharacterized protease MJ0090 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O32034 1.75e-42 155 31 8 314 3 trhP1 tRNA hydroxylation protein P1 Bacillus subtilis (strain 168)
P44700 6.92e-33 130 29 13 343 3 trhP tRNA hydroxylation protein P Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P59916 4.92e-32 127 29 8 304 3 prtC Collagenase Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
P56113 5.42e-32 127 30 8 296 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZMR3 1.08e-31 125 30 8 296 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain J99 / ATCC 700824)
P76403 9.84e-28 115 28 10 325 1 trhP tRNA hydroxylation protein P Escherichia coli (strain K12)
P76104 3.47e-26 112 31 8 293 1 rlhA 23S rRNA 5-hydroxycytidine C2501 synthase Escherichia coli (strain K12)
O32035 1.68e-20 93 22 8 330 3 trhP2 tRNA hydroxylation protein P2 Bacillus subtilis (strain 168)
P33437 4.28e-15 78 25 5 240 1 prtC Collagenase (Fragment) Porphyromonas gingivalis

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09965
Feature type CDS
Gene -
Product peptidase U32 family protein
Location 100046 - 101041 (strand: -1)
Length 996 (nucleotides) / 331 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1416
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01136 Peptidase family U32

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0826 Translation, ribosomal structure and biogenesis (J) J 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K24844 O2-independent ubiquinone biosynthesis protein UbiU - -

Protein Sequence

MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLEQAVEYVHRHQRHLHIAINTFAHPDGFSRWQRAVDMAADLGADALILADISMLEYAAERYPHIERHVSVQASATNTEAIRFYQRNFAVHRIVLPRVLSIQQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQETPQGLESRLNDVLIDRYGADENAGYPTLCKGRYCVDSKPYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVTDVAKVWRQAIDRCKADPENYAPDAAWMQALGSMSEGRQTTLGAYHRKWQ

Flanking regions ( +/- flanking 50bp)

TGCCATTTACAATTTCTGATCATTTTATTATTCAGTCTGAGAGTCTCACCATGGAACTGTTGTGTCCCGCCGGTAACTTACCCGCACTGAAAGCCGCCGTCGATAATGGCGCAGATGCGGTTTATATCGGTTTAAAAGATGATACCAATGCCCGTCATTTCGCCGGTCTGAATTTTACTGAAAAAAAACTCGAACAGGCGGTGGAGTATGTTCACCGCCATCAGCGCCATCTGCATATTGCGATTAATACCTTTGCACATCCGGACGGATTCAGCCGCTGGCAGCGCGCCGTGGATATGGCAGCCGATTTGGGTGCCGACGCACTGATCCTTGCAGATATCTCAATGCTCGAATATGCCGCAGAGCGCTATCCGCATATTGAGCGCCATGTCTCCGTTCAGGCGTCTGCCACGAATACCGAAGCTATCCGCTTCTATCAGCGCAATTTTGCCGTCCACCGCATTGTACTGCCGCGTGTGCTCTCCATTCAGCAGGTAAAACAACTCGCCCGTACCAGTCCGGTGCCGCTGGAAGTCTTTGCTTTCGGCAGCCTCTGTATTATGGCGGAAGGCCGCTGTTATCTCTCTTCCTACCTGACCGGCGAATCACCGAATACGGTCGGTGCCTGTTCACCGGCACGATTTGTCCGCTGGCAGGAGACCCCGCAGGGGCTGGAATCCCGCCTCAATGATGTGCTGATTGACCGCTACGGTGCTGATGAAAACGCCGGTTATCCGACGCTGTGTAAAGGCCGCTACTGTGTGGACAGCAAGCCTTATCATGCCCTCGAAGAACCAACCAGCCTGAATACACTGGAATTACTGCCGGAACTGATGGCGGCAAATATTGCCTCCGTGAAAATTGAGGGTCGTCAGCGCAGTCCGGCGTATGTCACTGACGTGGCGAAAGTCTGGCGCCAGGCGATAGATCGCTGTAAAGCTGACCCGGAAAATTATGCCCCGGATGCTGCCTGGATGCAGGCGCTGGGCAGTATGTCTGAAGGGCGTCAGACCACACTCGGCGCTTATCACCGCAAATGGCAGTAACGGGGAGAAAAACAATGCAATTTTCATTAGGTTCAGTCCTCTATTACTGG