Homologs in group_1413

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08730 FBDBKF_08730 90.9 Morganella morganii S1 - ABC transporter permease
EHELCC_12795 EHELCC_12795 90.9 Morganella morganii S2 - ABC transporter permease
NLDBIP_13135 NLDBIP_13135 90.9 Morganella morganii S4 - ABC transporter permease
LHKJJB_13420 LHKJJB_13420 90.9 Morganella morganii S3 - ABC transporter permease
HKOGLL_11610 HKOGLL_11610 90.9 Morganella morganii S5 - ABC transporter permease
PMI_RS17110 PMI_RS17110 76.3 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of the homologs in the orthogroup group_1413

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1413

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09950
Feature type CDS
Gene -
Product ABC transporter permease
Location 96800 - 97942 (strand: 1)
Length 1143 (nucleotides) / 380 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1413
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12698 ABC-2 family transporter protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Protein Sequence

MRFPSIWRGFRSAFSQETRQAIRSPVFHWLSWLFPLILFTLISANFSEGTLLNLPVSAVDYDHSPLSRTLVRNLNAGSHASVTPHDDPSVALERIGSAEDYAMLMIPARFESDVLSGKQPTVRMYYNALFYASGSYAIQDFSGLITELNAQYRATLATEMGKTVPRLAQVTMTYDSLFNASGSYIYYQQFAATIHMLQLFVVTLTIYSMSRGTMLLSIKPLFSGVLGKLAPYTFFFTTLLMIELAALVTFSGAKMAGNPLYMLLIGFFYVMAAQSVGLLLYTFTSNAIMAYSMIGMLVSIAMAFSGMAVPELSMILPARIISNLEPLTHALNAMFDIFLREVSLQHILYVCSVLLIYPVVSAFFVRNRLPKRLALQGGAA

Flanking regions ( +/- flanking 50bp)

AAGACCGGGAATGAGCTCATTATGGCGCTGGGATAAATAAGGTTGCTGTGATGAGATTCCCGTCAATCTGGCGCGGCTTTCGCAGCGCTTTTTCACAAGAAACACGCCAGGCTATCCGCAGCCCGGTTTTTCACTGGCTGAGCTGGCTGTTTCCGCTGATTCTGTTTACGCTCATCAGCGCAAACTTTTCGGAAGGTACATTACTGAACCTGCCGGTTTCGGCTGTTGATTATGACCACAGCCCGTTATCACGCACGCTGGTGCGTAATCTGAATGCGGGCTCTCACGCCAGTGTCACGCCGCATGATGATCCGTCTGTCGCACTGGAGCGGATAGGCAGCGCGGAAGATTACGCCATGCTGATGATCCCCGCACGCTTTGAAAGTGATGTATTATCCGGGAAACAACCGACAGTCAGGATGTATTACAATGCGCTGTTTTATGCCTCCGGCAGCTATGCTATTCAGGATTTCAGCGGGCTGATTACAGAACTGAATGCGCAGTACCGCGCCACACTTGCCACAGAGATGGGAAAAACCGTACCAAGGCTCGCGCAGGTGACAATGACCTATGACAGCCTGTTTAATGCCAGCGGCAGTTACATTTATTATCAGCAGTTTGCGGCGACTATCCATATGCTGCAATTATTTGTGGTCACTCTCACTATCTACAGTATGTCACGCGGAACTATGCTGTTATCGATTAAGCCTCTGTTCAGCGGTGTGCTCGGGAAACTGGCGCCTTATACTTTTTTCTTTACCACCCTCCTGATGATTGAACTCGCCGCACTGGTCACATTTTCCGGTGCGAAAATGGCAGGTAACCCATTGTATATGTTACTTATCGGTTTCTTCTATGTGATGGCGGCACAGAGTGTCGGGCTATTGCTGTATACCTTCACCAGTAATGCAATTATGGCTTACAGTATGATCGGGATGCTGGTGAGTATCGCGATGGCCTTCTCCGGGATGGCGGTGCCTGAGCTGTCGATGATTTTACCGGCGCGGATTATCTCTAATCTTGAGCCGCTGACCCATGCCCTTAACGCGATGTTTGATATCTTCCTGCGCGAAGTATCATTGCAGCATATTTTGTATGTTTGTTCGGTATTGCTGATTTATCCGGTGGTGAGTGCGTTCTTTGTTCGTAACCGACTGCCTAAACGGCTGGCATTGCAGGGAGGTGCGGCGTGAAACTCTACTTTCAGACCTTCGTGAAAGTTCTGCTCGGGATGCTGGCAAAA