Homologs in group_1351

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08375 FBDBKF_08375 86.4 Morganella morganii S1 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
EHELCC_13150 EHELCC_13150 86.4 Morganella morganii S2 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
NLDBIP_13490 NLDBIP_13490 86.4 Morganella morganii S4 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
LHKJJB_13065 LHKJJB_13065 86.4 Morganella morganii S3 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
HKOGLL_11965 HKOGLL_11965 86.4 Morganella morganii S5 dedA Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family
PMI_RS05140 PMI_RS05140 43.0 Proteus mirabilis HI4320 - VTT domain-containing protein

Distribution of the homologs in the orthogroup group_1351

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1351

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AA60 2.49e-06 48 26 3 159 1 yghB Inner membrane protein YghB Escherichia coli (strain K12)
P0AA61 2.49e-06 48 26 3 159 3 yghB Inner membrane protein YghB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AA62 2.49e-06 48 26 3 159 3 yghB Inner membrane protein YghB Escherichia coli O157:H7
P0AA66 2.03e-05 46 27 2 140 3 yqjA Inner membrane protein YqjA Shigella flexneri
P0AA63 2.03e-05 46 27 2 140 1 yqjA Inner membrane protein YqjA Escherichia coli (strain K12)
P0AA64 2.03e-05 46 27 2 140 3 yqjA Inner membrane protein YqjA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AA65 2.03e-05 46 27 2 140 3 yqjA Inner membrane protein YqjA Escherichia coli O157:H7
P0A1F4 2.48e-05 46 28 3 156 3 yghB Inner membrane protein YghB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1F5 2.48e-05 46 28 3 156 3 yghB Inner membrane protein YghB Salmonella typhi
Q89AV4 3.79e-05 45 29 2 101 3 bbp_130 Uncharacterized membrane protein bbp_130 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8KA02 7.79e-05 45 27 0 96 3 BUsg_132 Uncharacterized membrane protein BUsg_132 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57239 0.000146 44 26 0 96 3 BU139 Uncharacterized membrane protein BU139 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09575
Feature type CDS
Gene -
Product VTT domain-containing protein
Location 15493 - 16002 (strand: -1)
Length 510 (nucleotides) / 169 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1351
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF09335 VTT domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0586 Cell wall/membrane/envelope biogenesis (M) M Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family

Protein Sequence

MEWIHNHLAILHSHPVWLLLILFFIALSKSTIILSSVLPPASVMLMTVVTLAFPVVPVVIIWLVITLGATGGSLLSYYLGRIIVTRNYFPGLMAKYHVALGKAQNRLQNSGLVILFTSRFIAVLRYLIPMAAGLLRFSHTRVLLTCLLSAGVWTALYMLIAKGISFTFF

Flanking regions ( +/- flanking 50bp)

ATACTTGTGATTAGTGCGGCAGTCGGTGAAAAACGAAGGGAGGCAAACTCATGGAATGGATACATAATCATCTGGCGATATTGCACAGCCATCCTGTCTGGCTGTTATTAATCCTGTTTTTTATCGCGCTGAGTAAATCGACCATCATTCTGTCGTCAGTATTGCCACCCGCGTCCGTGATGCTGATGACGGTCGTCACCCTGGCATTTCCCGTGGTTCCGGTTGTGATTATCTGGCTGGTCATCACCCTGGGGGCTACCGGCGGCTCACTGCTTTCATACTATCTCGGCAGAATTATTGTCACCCGTAACTATTTTCCCGGGCTGATGGCAAAATATCATGTCGCGCTCGGGAAAGCACAAAACCGATTACAAAACAGCGGATTGGTTATTTTATTTACATCGCGGTTTATTGCCGTACTGCGCTATCTGATCCCGATGGCAGCAGGGTTACTGCGCTTTTCCCACACCAGGGTGCTGCTTACCTGCCTGCTCTCCGCCGGGGTCTGGACTGCCCTTTATATGCTGATTGCCAAGGGCATATCATTTACCTTTTTCTGATACCGTTTTCTGACGTCTGCTTACAGCCAGTTCTTACGTTTGAAATAGAG