Homologs in group_4103

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4103

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4103

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I750 4.19e-05 48 31 0 114 1 tssA1 Type VI secretion system component TssA1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09405
Feature type CDS
Gene -
Product type VI secretion system ImpA family N-terminal domain-containing protein
Location 1983125 - 1984249 (strand: 1)
Length 1125 (nucleotides) / 374 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4103
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF06812 ImpA, N-terminal, type VI secretion system

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3515 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component TssA1/VasJ/EvfE, contains ImpA_N domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11902 type VI secretion system protein ImpA Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MSEELQSTFQSDFYKDVLKPLPGKFVCGEGIEYDPLFITLQSKMAPKLGAEYGDFVETTEPVNWREIENDCLELLTKSKHVRLIILLIRSRSRQIGLFALEEGLMAMYQLLKDFPNEVHPQLYDEGEFEPFMRANAISELDDIDGFLLDFRQLTLPKINGLQLTVKEIERAFAIPKDENSLAEESVVGILNEWRTKNDKTLASLNNAAFILDAIKKLARETLENETPTLPVLTLILALFNKDLTHSGNKSAAAAAVAESENSMSALVFSDESPDKDRSNQPEDSVSTTTETVVDGDTTTVTTERIVYREKGINTRQDALERIREARAWFQQTEPGNPIILLLTYAEGAAGKNFVELSKLFPADMLAILDINKEM

Flanking regions ( +/- flanking 50bp)

AAACGCACCTTAACTGATTACTGATTTTCAACAGATAATGGAATATGACCGTGAGCGAAGAACTGCAATCTACTTTTCAGTCCGATTTTTATAAAGACGTACTCAAACCGCTGCCGGGGAAATTCGTCTGCGGTGAAGGTATTGAATATGACCCGTTATTCATCACATTGCAGTCCAAAATGGCACCAAAACTCGGTGCCGAGTATGGTGATTTCGTCGAAACGACCGAACCGGTTAACTGGCGTGAAATCGAAAATGACTGCCTTGAGCTTCTGACGAAAAGTAAACATGTTCGCCTGATTATTCTGTTAATTCGTTCACGCAGCCGTCAGATAGGTCTTTTTGCCCTGGAAGAAGGTCTGATGGCGATGTATCAGTTGCTGAAAGATTTTCCCAATGAAGTTCATCCCCAGCTTTACGATGAAGGGGAATTTGAGCCGTTTATGCGGGCAAATGCCATTTCTGAGCTGGATGATATCGATGGCTTTCTGCTCGATTTCCGCCAGCTCACACTGCCGAAAATTAACGGACTTCAGCTGACAGTTAAAGAAATTGAACGCGCCTTTGCTATCCCGAAAGACGAAAATTCCTTAGCGGAAGAGAGTGTCGTCGGGATACTGAATGAATGGCGTACCAAAAATGATAAAACACTGGCATCACTGAATAATGCGGCATTCATCCTGGATGCGATTAAAAAACTGGCCCGCGAAACCTTAGAAAATGAAACACCGACACTGCCGGTACTGACATTAATACTGGCACTGTTTAATAAAGATCTGACCCACAGCGGTAATAAATCAGCCGCTGCTGCTGCGGTGGCTGAAAGTGAAAACTCGATGTCTGCTTTAGTCTTTTCTGATGAGTCGCCGGACAAAGACCGCAGTAATCAACCCGAAGATTCTGTCAGCACAACCACAGAAACAGTTGTTGATGGTGATACAACAACGGTGACAACCGAACGCATTGTCTACCGTGAAAAAGGGATCAATACCCGGCAGGATGCCCTGGAAAGGATCCGCGAAGCGCGTGCATGGTTTCAGCAAACCGAACCCGGTAACCCGATTATTTTGCTGCTGACCTATGCCGAAGGAGCGGCAGGAAAAAATTTCGTTGAACTCAGTAAATTATTCCCTGCTGACATGCTTGCTATTTTAGATATTAACAAGGAAATGTAATGAAACTAAAATTACTCGTGGTATTAGCGGCAATGGGAATGGCGAAATTC