Homologs in group_3720

Help

2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS00085 F4V73_RS00085 32.5 Morganella psychrotolerans - Hcp family type VI secretion system effector
F4V73_RS07030 F4V73_RS07030 26.6 Morganella psychrotolerans - type VI secretion system tube protein Hcp

Distribution of the homologs in the orthogroup group_3720

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3720

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I747 9.51e-30 109 40 3 161 1 hcp1 Protein hcp1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09355
Feature type CDS
Gene -
Product Hcp family type VI secretion system effector
Location 1968826 - 1969311 (strand: -1)
Length 486 (nucleotides) / 161 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3720
Orthogroup size 3
N. genomes 1

Actions

Genomic region

Domains

PF05638 Type VI secretion system effector, Hcp

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3157 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component Hcp (secreted cytotoxin)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11903 type VI secretion system secreted protein Hcp Biofilm formation - Pseudomonas aeruginosa
Bacterial secretion system		 -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041202 Hcp family type VI secretion system effector VF1263 Effector delivery system

Protein Sequence

MAQDMFLRIAGIDGEALDHAHKDEIEVLSWRWGVNQQSNMHSGSGGGSGKATVEDFTFVHYTDRASPNLLSYCLSGKHIKDIQFTVRKAGGTPLEYLIIKFTDVIVTDVAMQGSVEDESRPREVVKFSFTKMTQEYVIQNADGNKSGTIAATYDVKANLIG

Flanking regions ( +/- flanking 50bp)

ATTACCTATCAAAGTTAATTTGATTAATGCATTAATAAGAGGAAATACAGATGGCTCAAGATATGTTTTTAAGAATCGCAGGCATCGACGGTGAAGCACTGGATCACGCACACAAGGATGAAATTGAAGTTCTGTCATGGCGCTGGGGTGTTAACCAGCAGTCCAACATGCACAGTGGTTCAGGTGGTGGTTCTGGTAAAGCAACTGTGGAAGATTTCACATTTGTTCACTACACCGACCGTGCAAGTCCAAACCTGCTGAGCTACTGCTTATCTGGTAAACACATCAAAGACATCCAATTTACCGTTCGTAAAGCGGGTGGTACCCCACTGGAATACCTGATCATCAAATTTACTGATGTTATCGTTACCGATGTTGCGATGCAGGGTTCTGTTGAAGATGAAAGCCGTCCTCGTGAAGTGGTTAAATTCTCTTTCACTAAGATGACTCAGGAATATGTAATTCAGAATGCTGATGGTAACAAATCTGGTACTATCGCAGCAACCTACGATGTTAAAGCTAACCTGATTGGCTGATAACATTTTATATTGAATTAAAACCTGCCATTTTCGGATGGCAGGTTTTT