Homologs in group_903

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04765 FBDBKF_04765 95.2 Morganella morganii S1 agaE PTS N-acetylgalactosamine transporter subunit IID
EHELCC_06055 EHELCC_06055 95.2 Morganella morganii S2 agaE PTS N-acetylgalactosamine transporter subunit IID
NLDBIP_06375 NLDBIP_06375 95.2 Morganella morganii S4 agaE PTS N-acetylgalactosamine transporter subunit IID
LHKJJB_03255 LHKJJB_03255 95.2 Morganella morganii S3 agaE PTS N-acetylgalactosamine transporter subunit IID
HKOGLL_06730 HKOGLL_06730 95.2 Morganella morganii S5 agaE PTS N-acetylgalactosamine transporter subunit IID
PMI_RS10525 PMI_RS10525 39.0 Proteus mirabilis HI4320 - PTS system mannose/fructose/sorbose family transporter subunit IID

Distribution of the homologs in the orthogroup group_903

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_903

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P42911 2.75e-68 216 42 4 255 3 agaD N-acetylgalactosamine permease IID component Escherichia coli (strain K12)
P69806 1.01e-49 169 34 5 269 3 manZ PTS system mannose-specific EIID component Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69805 1.01e-49 169 34 5 269 1 manZ PTS system mannose-specific EIID component Escherichia coli (strain K12)
P69807 1.01e-49 169 34 5 269 3 manZ PTS system mannose-specific EIID component Escherichia coli O157:H7
P26382 1.49e-41 147 34 3 268 4 levG Fructose permease IID component Bacillus subtilis (strain 168)
P37083 2.54e-39 141 34 3 268 2 sorM PTS system sorbose-specific EIID component Klebsiella pneumoniae
Q9RGG2 3.46e-36 134 31 3 261 2 sorD PTS system sorbose-specific EIID component Lacticaseibacillus casei

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09235
Feature type CDS
Gene agaE
Product PTS N-acetylgalactosamine transporter subunit IID
Location 1934408 - 1935286 (strand: 1)
Length 879 (nucleotides) / 292 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_903
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03613 PTS system mannose/fructose/sorbose family IID component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3716 Carbohydrate transport and metabolism (G) G Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IID component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02747 N-acetylgalactosamine PTS system EIID component Galactose metabolism
Metabolic pathways
Phosphotransferase system (PTS)		 -

Protein Sequence

MASEKTHSSAPAQEETLLPADCNQNVYEDQTTGADLTRKDINRIAWRSMLLQASFNYERMQAAGWLYGLLPGLKKIHTNPRDLARAMKGHMGFFNTHPFLVTFVIGIILAMERSKQDVNSIQSTKIAVGAPLGGIGDAMFWLTLLPICGGIGASLALQGSILGAVVFLVMFNVVHLGLRFGLAHYAYRMGVAAIPLIKANTKKVGHAASIVGMTVIGALVATYVKLSTTLEITAGDAVVKLQSDVIDKLMPAFLPLVYTLTMFWLVRRGWSPLRLILLTVVLGIAGKFAHFL

Flanking regions ( +/- flanking 50bp)

CAAACCGGCGACAACCGAACCGGCACATCCGTCACAAGAGGAATTTGAAGATGGCATCTGAAAAAACGCATTCATCTGCGCCCGCTCAGGAAGAAACCTTGCTGCCCGCAGACTGTAATCAGAACGTTTATGAGGATCAGACAACCGGCGCTGACCTGACACGCAAAGATATTAACCGGATAGCCTGGCGTTCCATGCTATTACAAGCCTCATTTAACTATGAGCGTATGCAGGCCGCGGGCTGGCTTTACGGTCTTCTGCCCGGACTGAAAAAAATCCATACCAATCCGCGTGATCTTGCCCGCGCCATGAAAGGTCACATGGGCTTTTTCAATACGCACCCGTTCCTGGTGACATTTGTTATCGGCATCATTCTGGCGATGGAGCGTTCCAAACAGGATGTAAACAGTATTCAGAGCACTAAAATTGCGGTCGGTGCGCCACTGGGCGGGATTGGTGATGCTATGTTCTGGCTGACACTCCTGCCTATCTGCGGTGGGATCGGCGCAAGCCTGGCATTACAGGGCTCGATTCTCGGCGCGGTGGTTTTTCTGGTGATGTTTAACGTCGTTCACTTAGGGCTGCGTTTCGGACTGGCGCATTATGCTTACCGCATGGGTGTCGCGGCTATCCCGCTGATTAAAGCCAATACCAAAAAAGTGGGTCATGCTGCCTCGATTGTCGGTATGACAGTCATTGGTGCGTTGGTTGCAACCTATGTAAAATTATCCACCACACTGGAAATCACCGCCGGTGATGCCGTCGTCAAATTACAGAGTGATGTGATTGATAAACTGATGCCCGCCTTTCTGCCGCTGGTCTATACCCTGACGATGTTCTGGCTGGTTCGCCGGGGCTGGAGCCCGTTACGTCTGATTCTGCTGACCGTCGTGTTAGGTATTGCCGGGAAATTTGCACACTTCCTGTAAACAGAAATATAAAGGAGAGACTGATGCCGGGAATTATTTTATGTGGTCAC