Homologs in group_2666

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04710 FBDBKF_04710 94.0 Morganella morganii S1 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
EHELCC_06000 EHELCC_06000 94.0 Morganella morganii S2 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
NLDBIP_06320 NLDBIP_06320 94.0 Morganella morganii S4 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
LHKJJB_03200 LHKJJB_03200 94.0 Morganella morganii S3 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain
HKOGLL_06675 HKOGLL_06675 94.0 Morganella morganii S5 rbsB ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain

Distribution of the homologs in the orthogroup group_2666

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2666

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A0QYB3 8.38e-38 140 36 3 223 1 xypA Xylitol-binding protein Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
A0QYB5 6.43e-34 130 31 6 270 1 thpA D-threitol-binding protein Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P49308 1.1e-29 118 31 5 244 3 mocB Putative rhizopine-binding protein Rhizobium meliloti
P0A2C5 3.81e-27 110 32 6 252 1 rbsB Ribose import binding protein RbsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2C6 3.81e-27 110 32 6 252 3 rbsB Ribose import binding protein RbsB Salmonella typhi
P36949 1.07e-26 110 35 5 223 1 rbsB Ribose import binding protein RbsB Bacillus subtilis (strain 168)
P02925 2.53e-26 108 32 6 252 1 rbsB Ribose import binding protein RbsB Escherichia coli (strain K12)
P44737 3.21e-22 97 31 3 206 1 rbsB Ribose import binding protein RbsB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
B1G898 6.62e-19 88 31 8 241 1 BgramDRAFT_5566 D-apiose import binding protein Paraburkholderia graminis (strain ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744 / C4D1M)
Q2JZQ5 8.1e-17 82 31 6 224 1 RHE_PF00037 D-apiose import binding protein Rhizobium etli (strain ATCC 51251 / DSM 11541 / JCM 21823 / NBRC 15573 / CFN 42)
P23905 1.74e-16 82 28 11 310 1 mglB D-galactose/methyl-galactoside binding periplasmic protein MglB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AEE7 1.97e-16 82 28 10 295 3 mglB D-galactose/methyl-galactoside binding periplasmic protein MglB Shigella flexneri
P0AEE5 1.97e-16 82 28 10 295 1 mglB D-galactose/methyl-galactoside binding periplasmic protein MglB Escherichia coli (strain K12)
P0AEE6 1.97e-16 82 28 10 295 3 mglB D-galactose/methyl-galactoside binding periplasmic protein MglB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P23925 8.9e-16 80 27 10 295 3 mglB D-galactose/methyl-galactoside binding periplasmic protein MglB Citrobacter freundii
Q8G848 3.92e-15 78 30 6 218 1 fruE Fructose import binding protein FruE Bifidobacterium longum (strain NCC 2705)
B9JK76 8.9e-14 74 31 7 203 3 Arad_9233 D-apiose import binding protein Rhizobium rhizogenes (strain K84 / ATCC BAA-868)
A6VKQ8 1.38e-13 73 31 6 188 1 Asuc_0175 D-apiose import binding protein Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
P39325 6.22e-13 71 28 9 240 1 ytfQ Galactofuranose-binding protein YtfQ Escherichia coli (strain K12)
P44883 2e-10 64 25 14 334 1 mglB D-galactose/methyl-galactoside binding periplasmic protein MglB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9I2F8 2.55e-09 60 25 7 271 1 rbsB D-ribose/D-allose-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P45047 3.45e-09 60 27 6 205 3 xylF D-xylose-binding periplasmic protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P39265 1.12e-08 58 31 6 143 1 alsB D-allose-binding periplasmic protein Escherichia coli (strain K12)
P37387 1.1e-06 53 28 6 191 1 xylF D-xylose-binding periplasmic protein Escherichia coli (strain K12)
B8F4D0 4.62e-05 48 24 8 226 3 purR HTH-type transcriptional repressor PurR Glaesserella parasuis serovar 5 (strain SH0165)
B0BP99 5.78e-05 47 22 9 229 3 purR HTH-type transcriptional repressor PurR Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
Q9CN88 0.000749 44 27 11 191 3 purR HTH-type transcriptional repressor PurR Pasteurella multocida (strain Pm70)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09185
Feature type CDS
Gene -
Product substrate-binding domain-containing protein
Location 1923961 - 1924920 (strand: 1)
Length 960 (nucleotides) / 319 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2666
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF13407 Periplasmic binding protein domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1879 Carbohydrate transport and metabolism (G) G ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K17205 putative xylitol transport system substrate-binding protein ABC transporters -

Protein Sequence

MGGQAFAAQDNPVKISVLMYGMKAEFVQLMEKAAKEHPAVKSGDAVITVYDGRYDPMVQNNQAETAIQTKTDAIIINPMDYEANIDVVTMANEAKIPVIVTNARLNTDKMTAEVVSDDVLGGYMEAKAVLAKMNCEGNVVIIEGPKGGSGEIQRGEGNDKAIAECGPGKVKVLERKTANWSRAEAMPLMENWLQKHRGKIGGVIAQNDEMALGAIEAIKSAGLNVSDFSIAGVDGVSDAIRSVQEGEMVSILQDANAQMQGSIDLAMKAVKGDSYQPQSKIWAQYADKLQWNDGKDNHYAIPWTEVTTENAKQLLDARK

Flanking regions ( +/- flanking 50bp)

CAACCATGAACAAACTAACCAAAATCGCAGCTCTTACCTCTGCTCTGCTGATGGGCGGTCAGGCATTTGCTGCACAGGATAATCCGGTAAAAATTTCGGTACTGATGTATGGCATGAAAGCTGAGTTCGTTCAGTTAATGGAAAAAGCGGCAAAAGAACATCCGGCTGTGAAAAGTGGCGATGCGGTTATTACTGTTTACGATGGTCGTTATGACCCTATGGTACAGAATAACCAGGCTGAAACCGCTATTCAGACCAAAACTGACGCTATCATTATCAACCCGATGGATTATGAAGCGAACATCGACGTCGTCACTATGGCGAATGAAGCAAAAATCCCTGTCATTGTGACCAACGCCCGTCTGAATACAGACAAAATGACGGCTGAAGTGGTTTCTGATGACGTCCTCGGCGGTTACATGGAAGCCAAAGCGGTTCTGGCAAAAATGAACTGTGAAGGTAACGTTGTTATTATCGAAGGACCGAAAGGCGGCAGCGGTGAAATTCAGCGCGGTGAAGGTAATGACAAAGCCATTGCAGAGTGTGGTCCGGGCAAAGTGAAAGTGTTAGAGCGTAAAACCGCTAACTGGTCACGCGCTGAAGCTATGCCGTTGATGGAAAACTGGTTACAAAAACACCGTGGTAAAATCGGCGGCGTTATCGCACAGAATGACGAAATGGCATTAGGTGCTATTGAAGCTATCAAATCTGCCGGTCTGAATGTCAGTGATTTCTCTATCGCTGGTGTGGACGGTGTTTCTGATGCTATCCGTTCCGTGCAGGAAGGCGAAATGGTTTCCATCCTTCAGGATGCAAACGCACAGATGCAGGGCTCTATCGACCTTGCAATGAAAGCCGTAAAAGGTGACAGCTATCAGCCGCAGTCCAAAATCTGGGCGCAATATGCAGACAAACTGCAATGGAATGACGGTAAAGATAACCACTATGCTATTCCGTGGACAGAAGTAACAACAGAGAACGCAAAACAGTTACTGGATGCCCGTAAGTAAGCTGATTACACCTCTTTTTCTGAACAAACCGCTGTTTCCCTGTGAAAACG