Homologs in group_898

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04705 FBDBKF_04705 43.0 Morganella morganii S1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
EHELCC_05995 EHELCC_05995 43.0 Morganella morganii S2 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
NLDBIP_06315 NLDBIP_06315 43.0 Morganella morganii S4 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
LHKJJB_03195 LHKJJB_03195 43.0 Morganella morganii S3 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
HKOGLL_06670 HKOGLL_06670 43.0 Morganella morganii S5 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
F4V73_RS09180 F4V73_RS09180 43.0 Morganella psychrotolerans - ABC transporter permease

Distribution of the homologs in the orthogroup group_898

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_898

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36948 9.41e-68 218 43 6 336 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P0AGI1 1.41e-59 197 43 4 315 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 1.41e-59 197 43 4 315 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 1.41e-59 197 43 4 315 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
P44736 3.19e-59 196 42 5 305 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P32720 2.93e-46 163 37 4 301 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
P44885 2.8e-45 160 36 6 340 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AE27 8.15e-42 151 34 3 317 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 8.15e-42 151 34 3 317 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
Q1JUP6 3.3e-40 147 36 3 329 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
P77315 1.3e-39 145 33 5 337 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
Q9F9B1 4.09e-37 139 36 5 307 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
P45045 8.87e-37 139 31 6 382 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37772 1.44e-35 135 35 6 304 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
Q2PBL9 4.66e-35 133 31 5 276 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
Q2PBM2 4.71e-35 133 33 5 275 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
Q7N2D8 8.35e-35 133 31 5 276 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A4TQL6 1.42e-34 132 32 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 1.42e-34 132 32 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 1.42e-34 132 32 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 1.42e-34 132 32 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 1.42e-34 132 32 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
A1JJ54 2.4e-34 132 33 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
B1JLQ1 2.83e-34 132 32 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ0 3.08e-34 132 32 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 3.08e-34 132 32 4 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FMJ8 3.91e-34 131 31 2 293 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P0AGI7 2.7e-33 130 50 0 133 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI7 1.08e-06 53 30 3 146 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 2.7e-33 130 50 0 133 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI4 1.08e-06 53 30 3 146 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 2.7e-33 130 50 0 133 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI5 1.08e-06 53 30 3 146 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 2.7e-33 130 50 0 133 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P0AGI6 1.08e-06 53 30 3 146 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
Q56036 3.66e-32 125 36 6 340 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8G845 5.92e-32 125 35 5 301 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
B2K3F9 9.4e-32 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A1JJ53 9.52e-32 124 31 7 314 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
B1JLQ2 1e-31 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 1e-31 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TQL7 1.16e-31 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 1.16e-31 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 1.16e-31 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 1.16e-31 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 1.16e-31 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
A7FMJ9 1.48e-31 124 30 7 333 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P23200 2.62e-31 123 35 5 339 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
P55569 2.92e-31 123 30 5 304 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q5PJE5 1.2e-29 119 29 6 320 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKQ2 1.25e-29 119 29 6 327 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 1.25e-29 119 29 6 327 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 1.25e-29 119 29 6 327 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
Q8Z2X7 5.31e-29 117 29 6 327 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q57321 8.91e-28 117 32 5 301 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
Q7N2D7 2.37e-27 112 30 7 328 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBM1 7.95e-27 111 30 7 338 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
P39328 1.35e-26 110 34 5 279 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
Q2PBL8 8.33e-26 108 30 8 321 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
P0AFS2 1.38e-25 108 30 7 340 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 1.38e-25 108 30 7 340 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 1.38e-25 108 30 7 340 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 1.38e-25 108 30 7 340 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 1.38e-25 108 30 7 340 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 1.38e-25 108 30 7 340 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
Q8XAY8 1.48e-25 108 28 2 316 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
P77672 1.56e-25 108 29 2 298 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 1.56e-25 108 29 2 298 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
B1LFA0 1.81e-25 107 30 7 340 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
A4WER3 2.16e-25 107 33 5 257 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
Q0T4L8 2.55e-25 107 29 2 298 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
B1IRU6 2.55e-25 107 29 3 298 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 2.55e-25 107 29 3 298 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
Q8X504 4.32e-25 106 30 7 340 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
Q83RD8 4.96e-25 106 29 2 298 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
B1LFA1 6.44e-25 106 29 2 298 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
Q8Z2X6 9.87e-25 105 29 5 317 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
A9MZG2 1.39e-24 105 30 5 301 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE2 1.49e-24 105 30 5 301 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
Q8ZKQ3 1.61e-24 105 30 5 301 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 1.61e-24 105 30 5 301 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q4J711 2.43e-24 105 29 12 347 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q8G846 3.29e-21 96 33 5 289 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
A6TEB6 1.78e-20 94 28 4 299 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A6TEB7 9.37e-20 92 30 3 294 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER2 1.57e-19 91 27 5 300 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
P0DX44 1.69e-05 49 25 6 214 3 CDR20291_0807 Tyrosine transport system permease protein Clostridioides difficile (strain R20291)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS09125
Feature type CDS
Gene -
Product ABC transporter permease
Location 1908937 - 1909977 (strand: 1)
Length 1041 (nucleotides) / 346 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_898
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10440 ribose transport system permease protein ABC transporters -

Protein Sequence

MQRITKSSVLSLVSSLGIGLVLAALIVGMSFASPVFLKTNNIVNILLQVATISIIATGMTYVILTGGIDLSVGSIVALSAVSLGTFIHAGMEWIGPDPSFVMELTVVMLSIAGAILVGTLCGLVNGFVIVCMKVPPFIATLGMMGIARGLALTIAGGKTLYSFPPSLRYLGNGKIAVTESFNLPVPVIIAFFVVMMSYYALTQTQFGRQTYALGGNREAVRLSGINVSWLEIRAYVINGGLAALGAVILVGRLNAAQPIAGEGYELDAIAATVIGGTSLAGGIGSVIGTAIGALIMGVLQNGLTLLNVASYSQRLIIGVVIILAVFLDQVRRGRVSFTFISRWFKR

Flanking regions ( +/- flanking 50bp)

ATATAAGCCCGGAACAACCACAGAATTGACCAATAGTTGGTAACATAATTATGCAACGTATCACTAAATCATCCGTATTATCACTTGTATCCAGTCTGGGCATCGGGTTGGTTCTTGCCGCGCTTATTGTCGGAATGAGCTTTGCTTCACCTGTTTTTCTCAAAACGAATAATATTGTCAATATATTGCTGCAAGTGGCGACTATCTCCATTATCGCAACAGGTATGACTTACGTCATTCTGACCGGCGGGATTGATTTGTCCGTCGGATCAATCGTAGCGCTGAGTGCCGTCAGCCTGGGAACCTTTATTCATGCCGGTATGGAATGGATTGGACCGGATCCCTCATTCGTGATGGAGCTGACCGTCGTTATGTTATCCATTGCCGGGGCAATTCTGGTCGGCACGCTTTGCGGGCTGGTGAACGGATTTGTTATTGTCTGCATGAAAGTACCGCCCTTTATTGCCACATTGGGCATGATGGGGATTGCGCGGGGGTTAGCGCTGACAATTGCCGGCGGAAAAACACTGTACAGCTTTCCGCCATCATTGCGTTATCTCGGTAACGGAAAAATTGCCGTAACAGAGAGCTTTAATCTGCCGGTTCCCGTTATTATTGCCTTTTTCGTGGTGATGATGAGTTATTACGCATTAACACAGACACAGTTCGGACGGCAAACCTATGCGCTGGGCGGCAACCGCGAAGCGGTCAGATTATCCGGTATCAATGTGTCCTGGCTGGAGATCCGCGCCTATGTGATTAACGGCGGACTAGCCGCTTTAGGGGCGGTTATTTTAGTCGGTCGTTTAAATGCAGCACAACCTATTGCCGGGGAAGGTTACGAACTGGATGCCATTGCCGCAACCGTTATCGGCGGCACCAGTTTAGCCGGGGGTATCGGCTCTGTTATTGGCACGGCTATCGGCGCTCTGATTATGGGCGTATTACAGAATGGTTTAACACTTCTCAATGTGGCGTCTTATTCACAAAGGCTGATTATCGGCGTTGTGATTATTTTAGCGGTATTTTTAGACCAGGTGCGCCGGGGCAGAGTATCATTTACGTTTATATCCCGCTGGTTTAAACGCTGATATGCCCTTATTCATTCAAACCGCAGGTTCATTGGCTGCGGTTTGAATGA