Homologs in group_820

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_04115 FBDBKF_04115 88.3 Morganella morganii S1 sdhE FAD assembly factor SdhE
EHELCC_05405 EHELCC_05405 88.3 Morganella morganii S2 sdhE FAD assembly factor SdhE
NLDBIP_05725 NLDBIP_05725 88.3 Morganella morganii S4 sdhE FAD assembly factor SdhE
LHKJJB_02605 LHKJJB_02605 88.3 Morganella morganii S3 sdhE FAD assembly factor SdhE
HKOGLL_06080 HKOGLL_06080 88.3 Morganella morganii S5 sdhE FAD assembly factor SdhE
PMI_RS09940 PMI_RS09940 69.2 Proteus mirabilis HI4320 sdhE FAD assembly factor SdhE

Distribution of the homologs in the orthogroup group_820

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_820

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7CPV1 9.17e-41 132 71 0 83 3 sdhE FAD assembly factor SdhE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8XEN6 9.17e-41 132 71 0 83 3 sdhE FAD assembly factor SdhE Salmonella typhi
Q5PJF5 9.17e-41 132 71 0 83 3 sdhE FAD assembly factor SdhE Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57K69 9.17e-41 132 71 0 83 3 sdhE FAD assembly factor SdhE Salmonella choleraesuis (strain SC-B67)
G4V4G2 2.43e-40 131 68 0 83 1 sdhE FAD assembly factor SdhE Serratia sp. (strain ATCC 39006)
Q7N1C1 8.98e-40 129 63 0 88 3 sdhE FAD assembly factor SdhE Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q666S3 2.75e-39 128 65 0 83 3 sdhE FAD assembly factor SdhE Yersinia pseudotuberculosis serotype I (strain IP32953)
Q8ZHJ5 2.75e-39 128 65 0 83 3 sdhE FAD assembly factor SdhE Yersinia pestis
P64559 1.92e-38 126 67 0 83 1 sdhE FAD assembly factor SdhE Escherichia coli (strain K12)
P64560 1.92e-38 126 67 0 83 3 sdhE FAD assembly factor SdhE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P64561 1.92e-38 126 67 0 83 3 sdhE FAD assembly factor SdhE Escherichia coli O157:H7
Q6D960 2.02e-38 126 69 0 83 3 sdhE FAD assembly factor SdhE Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q83JU2 2.49e-38 125 67 0 83 3 sdhE FAD assembly factor SdhE Shigella flexneri
Q9KPA2 1.12e-23 89 46 0 81 1 sdhE FAD assembly factor SdhE Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q7MHM8 5.64e-23 87 45 0 81 3 sdhE FAD assembly factor SdhE Vibrio vulnificus (strain YJ016)
Q5E305 6.02e-23 87 45 0 81 3 sdhE FAD assembly factor SdhE Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q6LMR2 1.16e-22 86 45 0 81 3 sdhE FAD assembly factor SdhE Photobacterium profundum (strain SS9)
Q8DC84 2.29e-22 85 44 0 81 3 sdhE FAD assembly factor SdhE Vibrio vulnificus (strain CMCP6)
Q87LM9 2.79e-22 85 44 0 81 3 sdhE FAD assembly factor SdhE Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q5R0Z7 4.07e-20 80 46 0 77 3 sdhE FAD assembly factor SdhE Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
Q4QMW1 4.29e-20 79 45 0 77 3 sdhE FAD assembly factor SdhE Haemophilus influenzae (strain 86-028NP)
Q9CK44 1.89e-19 78 45 0 74 3 sdhE FAD assembly factor SdhE Pasteurella multocida (strain Pm70)
Q65QC6 2.17e-19 78 45 0 75 3 sdhE FAD assembly factor SdhE Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
Q7VPK3 6.59e-18 74 39 0 78 3 sdhE FAD assembly factor SdhE Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q47WN6 2.32e-17 73 44 0 75 3 sdhE FAD assembly factor SdhE Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
P44025 6.53e-17 71 44 0 74 3 sdhE FAD assembly factor SdhE Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q83D70 8.58e-16 68 43 0 71 3 sdhE FAD assembly factor SdhE Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q5WWK6 2.05e-15 67 44 1 77 3 sdhE FAD assembly factor SdhE Legionella pneumophila (strain Lens)
Q8EH90 2.12e-15 67 41 1 82 3 sdhE FAD assembly factor SdhE Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q9I5G9 2.63e-15 67 41 0 74 3 sdhE FAD assembly factor SdhE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q5X4Y4 5.42e-15 66 44 1 77 3 sdhE FAD assembly factor SdhE Legionella pneumophila (strain Paris)
Q88MZ4 4.28e-14 64 38 0 76 3 sdhE FAD assembly factor SdhE Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Q4FQX4 2.68e-13 62 35 1 84 3 sdhE FAD assembly factor SdhE Psychrobacter arcticus (strain DSM 17307 / VKM B-2377 / 273-4)
Q8D2B6 3.58e-13 62 42 0 64 3 sdhE FAD assembly factor SdhE Wigglesworthia glossinidia brevipalpis
Q87XF1 8.93e-13 61 36 0 76 3 sdhE FAD assembly factor SdhE Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Q48EU3 8.93e-13 61 36 0 76 3 sdhE FAD assembly factor SdhE Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
Q4ZPD1 1.08e-12 60 37 0 74 3 sdhE FAD assembly factor SdhE Pseudomonas syringae pv. syringae (strain B728a)
Q4KGR0 5.21e-12 59 34 0 76 3 sdhE FAD assembly factor SdhE Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q82SG6 8.02e-10 53 32 0 76 3 sdhE FAD assembly factor SdhE Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)
Q54B20 4.41e-08 50 33 0 72 3 DDB_G0293946 Succinate dehydrogenase assembly factor 2, mitochondrial Dictyostelium discoideum
Q5NFS4 6.2e-08 49 40 0 57 3 sdhE FAD assembly factor SdhE Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
Q6F7U1 2.75e-07 47 28 0 70 3 sdhE FAD assembly factor SdhE Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q608F1 1.45e-06 45 32 0 64 3 sdhE FAD assembly factor SdhE Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Q5H0G1 1.52e-05 43 35 0 53 3 sdhE FAD assembly factor SdhE Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
Q8PKT3 1.59e-05 43 35 0 53 3 sdhE FAD assembly factor SdhE Xanthomonas axonopodis pv. citri (strain 306)
Q8P8V6 5.7e-05 41 34 1 61 3 sdhE FAD assembly factor SdhE Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q4UV74 5.7e-05 41 34 1 61 3 sdhE FAD assembly factor SdhE Xanthomonas campestris pv. campestris (strain 8004)
Q9PEF4 0.000109 40 28 0 70 3 sdhE FAD assembly factor SdhE Xylella fastidiosa (strain 9a5c)
Q87EF7 0.00033 39 28 0 66 3 sdhE FAD assembly factor SdhE Xylella fastidiosa (strain Temecula1 / ATCC 700964)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08555
Feature type CDS
Gene sdhE
Product FAD assembly factor SdhE
Location 1766147 - 1766431 (strand: -1)
Length 285 (nucleotides) / 94 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_820
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03937 Flavinator of succinate dehydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2938 Posttranslational modification, protein turnover, chaperones (O) O Succinate dehydrogenase flavin-adding protein, antitoxin component of the CptAB toxin-antitoxin module

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09159 antitoxin CptB - -

Protein Sequence

MDIENKPRIHWACRRGMRELDIAVMPFFQHEYDTLTDEQKRNFVQLLTSPDPDLFNWLMNKGRPDDDALYEIIRLIQERNQARMAAQTAAYYPD

Flanking regions ( +/- flanking 50bp)

GTGTTGGTACCGATATACCATCTTCAATAACATAAAAGGATATTCAGGTGCTGGATATTGAAAATAAACCCCGCATCCACTGGGCCTGCCGTCGCGGCATGCGGGAACTGGATATTGCGGTTATGCCGTTTTTTCAGCATGAATACGATACACTGACGGATGAACAAAAGCGGAATTTTGTACAGTTACTTACAAGTCCTGATCCGGACTTGTTTAACTGGCTGATGAATAAAGGCCGACCGGATGATGATGCGCTTTATGAGATAATCAGGCTGATTCAGGAACGCAATCAGGCACGAATGGCTGCACAGACTGCGGCATATTATCCCGACTGACCGCCGGAGTTGTCTCTGTGGTATGACCCGGATAACCGGGTCACTGTCTT