COG2938


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2938, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Succinate dehydrogenase flavin-adding protein, antitoxin component of the CptAB toxin-antitoxin module
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG2938 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_820 FBDBKF_04115 7918 8205 -1 sdhE FAD assembly factor SdhE Morganella morganii S1
1 group_820 EHELCC_05405 67375 67662 -1 sdhE FAD assembly factor SdhE Morganella morganii S2
2 group_820 NLDBIP_05725 108440 108727 -1 sdhE FAD assembly factor SdhE Morganella morganii S4
3 group_820 LHKJJB_02605 85964 86251 -1 sdhE FAD assembly factor SdhE Morganella morganii S3
4 group_820 HKOGLL_06080 7828 8115 -1 sdhE FAD assembly factor SdhE Morganella morganii S5
5 group_820 F4V73_RS08555 1766147 1766431 -1 sdhE FAD assembly factor SdhE Morganella psychrotolerans
6 group_820 PMI_RS09940 2154811 2155086 -1 sdhE FAD assembly factor SdhE Proteus mirabilis HI4320