Homologs in group_1988

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14910 FBDBKF_14910 86.8 Morganella morganii S1 yejM LPS biosynthesis-modulating metalloenzyme YejM
EHELCC_15715 EHELCC_15715 86.8 Morganella morganii S2 yejM LPS biosynthesis-modulating metalloenzyme YejM
NLDBIP_16245 NLDBIP_16245 86.8 Morganella morganii S4 yejM LPS biosynthesis-modulating metalloenzyme YejM
LHKJJB_15595 LHKJJB_15595 86.8 Morganella morganii S3 yejM LPS biosynthesis-modulating metalloenzyme YejM
HKOGLL_14715 HKOGLL_14715 86.8 Morganella morganii S5 yejM LPS biosynthesis-modulating metalloenzyme YejM
PMI_RS04040 PMI_RS04040 55.0 Proteus mirabilis HI4320 yejM LPS biosynthesis-modulating metalloenzyme YejM

Distribution of the homologs in the orthogroup group_1988

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1988

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD27 0.0 628 51 5 596 1 yejM Inner membrane protein YejM Escherichia coli (strain K12)
P0AD28 0.0 628 51 5 596 3 yejM Inner membrane protein YejM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AD29 0.0 628 51 5 596 3 yejM Inner membrane protein YejM Escherichia coli O157:H7
Q8Z579 0.0 623 51 5 596 3 yejM Inner membrane protein YejM Salmonella typhi
P40709 0.0 622 51 5 596 1 yejM Inner membrane protein YejM Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P44898 9.12e-149 444 40 9 585 4 HI_0841 Uncharacterized protein HI_0841 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07710
Feature type CDS
Gene yejM
Product LPS biosynthesis-modulating metalloenzyme YejM
Location 1611768 - 1613528 (strand: 1)
Length 1761 (nucleotides) / 586 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1988
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00884 Sulfatase
PF11893 Domain of unknown function (DUF3413)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3083 Cell wall/membrane/envelope biogenesis (M)
Signal transduction mechanisms (T)		 MT Periplasmic protein PbgA/YejM, regulator of the LPS biosynthesis, AlkP superfamily

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07014 uncharacterized protein - -

Protein Sequence

MVTYRPKYGDKVSQMISWGHWFTLFNILLSLALSSRYLFISDWPGTLTGRIYAISSWLGHFSFLAFALYLLIIFPLTFVVMSQRLLRFLSAAIGTAGLTLLLFDIGIYEQFRLHLNPVVWDLVINPVQGEMARRWQFIFIAIPVIFLVEMLFGTWSWQKLRSLNRQKFGKPVAVVFITAFITSHIMYIWADANFYRPVTMQRYNLPVSYPMTARKFLERHGLIDTSSYEQQLLLHGDPTAQGVEYPVNKLSYADTGSGYNLLLITLSYLDQDDISKSMPKLAHFAQESTQFSQHYSSEIDPEKAQFGLYYGISGTYYDGILNGRVPSALMSALSAQNYQTGFFSTENFTSPLYRYALLADYSLPPLRDTEEAGKKNSSITDVAYRWSAWLKQTRQGQPWFALVNLSAPVPLNSDMTDIDDVLGVLIQDIRARGEWDKTVIIITAGANDDVNELQSTWVTDGKFNRGQLRVPLLIHWPETPAQVITKLTAHPDIMATLMQRLLHVSNPQSEYTQGEDLFSPTRRKPWIFTGDNNNLVIIKPDSASVLTSQGKYQRFDENDDTIKHAKPDMAELLQVLTEQKRFIDTD

Flanking regions ( +/- flanking 50bp)

TCAGTGAAGATAAAGCGCATTAACCGCACTCCGGCTGATAACGAAACACTATGGTAACGTATCGTCCGAAATACGGTGACAAAGTCTCCCAGATGATAAGCTGGGGGCACTGGTTCACCCTGTTTAATATACTGCTGAGCCTCGCACTCAGCAGCCGTTACCTGTTTATTTCTGACTGGCCGGGCACTCTGACCGGTCGCATTTATGCCATCAGCAGCTGGCTTGGTCACTTCAGCTTTCTGGCGTTTGCCCTCTATCTGCTGATTATCTTCCCGCTCACCTTTGTGGTGATGTCGCAACGTCTGCTCAGGTTTCTCTCTGCCGCTATCGGAACCGCCGGACTGACACTGCTGCTGTTTGATATCGGGATTTATGAACAATTCCGCCTCCACCTGAACCCGGTCGTCTGGGATCTGGTGATAAACCCTGTACAGGGTGAAATGGCGCGGCGCTGGCAATTTATCTTTATTGCTATCCCGGTTATTTTTCTTGTTGAAATGCTGTTCGGCACCTGGAGCTGGCAGAAACTGCGCAGCCTGAACCGGCAAAAATTCGGTAAACCGGTTGCTGTGGTTTTTATCACCGCCTTTATTACCTCTCATATTATGTATATCTGGGCAGATGCCAATTTCTATCGTCCGGTAACAATGCAACGCTACAATCTGCCGGTTTCCTACCCGATGACCGCGCGCAAATTCCTCGAGCGCCACGGGCTGATTGACACCAGCAGTTATGAACAACAACTGCTTTTGCACGGCGATCCGACTGCGCAGGGTGTGGAATATCCGGTCAATAAACTGAGCTATGCGGACACCGGCAGCGGGTATAATTTGCTTCTCATCACACTCTCTTATCTCGATCAGGACGATATCAGCAAGTCGATGCCGAAGCTGGCGCATTTCGCACAGGAAAGTACGCAATTTTCCCAGCACTACAGCAGTGAGATTGATCCGGAAAAAGCCCAGTTCGGGCTGTATTACGGGATCTCCGGCACCTATTATGACGGCATACTGAACGGACGTGTTCCGTCGGCGCTGATGTCCGCGCTCAGCGCACAAAACTATCAGACCGGCTTTTTCTCAACAGAGAACTTTACGTCGCCGCTCTATCGCTATGCCCTGCTGGCAGACTACAGCCTGCCGCCACTGCGGGACACCGAAGAAGCCGGTAAGAAAAACAGCAGTATTACTGATGTGGCTTACCGCTGGAGTGCCTGGCTGAAACAAACCCGTCAGGGACAGCCGTGGTTTGCGCTGGTTAATCTGAGCGCACCTGTGCCGCTTAATTCTGATATGACTGATATTGATGATGTCCTGGGCGTACTGATACAGGATATCCGGGCGCGGGGTGAGTGGGATAAAACCGTCATTATCATTACTGCCGGTGCTAATGACGACGTGAATGAATTACAGAGCACCTGGGTCACCGACGGGAAATTTAACCGCGGACAGTTACGCGTACCGTTGCTTATCCACTGGCCTGAAACACCTGCGCAGGTTATCACTAAACTGACCGCGCACCCTGATATTATGGCAACGCTGATGCAGCGCCTGTTGCACGTCAGCAATCCGCAGAGTGAATATACTCAGGGCGAAGACCTTTTCAGCCCGACGCGCCGTAAACCATGGATATTTACCGGAGATAACAACAACCTGGTAATTATCAAACCGGACTCAGCTTCTGTTCTGACATCGCAGGGAAAATACCAGCGTTTCGATGAAAATGATGACACAATTAAGCATGCCAAGCCGGATATGGCAGAATTATTACAGGTTCTGACTGAGCAAAAACGGTTTATTGATACGGATTAACCCCGCAGATTAGCCCGCTCACTGAAACTGTGTGACGACAGATATAAAAA