Homologs in group_1988

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14910 FBDBKF_14910 55.0 Morganella morganii S1 yejM LPS biosynthesis-modulating metalloenzyme YejM
EHELCC_15715 EHELCC_15715 55.0 Morganella morganii S2 yejM LPS biosynthesis-modulating metalloenzyme YejM
NLDBIP_16245 NLDBIP_16245 55.0 Morganella morganii S4 yejM LPS biosynthesis-modulating metalloenzyme YejM
LHKJJB_15595 LHKJJB_15595 55.0 Morganella morganii S3 yejM LPS biosynthesis-modulating metalloenzyme YejM
HKOGLL_14715 HKOGLL_14715 55.0 Morganella morganii S5 yejM LPS biosynthesis-modulating metalloenzyme YejM
F4V73_RS07710 F4V73_RS07710 55.0 Morganella psychrotolerans yejM LPS biosynthesis-modulating metalloenzyme YejM

Distribution of the homologs in the orthogroup group_1988

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1988

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD27 0.0 633 51 6 591 1 yejM Inner membrane protein YejM Escherichia coli (strain K12)
P0AD28 0.0 633 51 6 591 3 yejM Inner membrane protein YejM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AD29 0.0 633 51 6 591 3 yejM Inner membrane protein YejM Escherichia coli O157:H7
P40709 0.0 630 51 6 591 1 yejM Inner membrane protein YejM Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z579 0.0 628 51 6 591 3 yejM Inner membrane protein YejM Salmonella typhi
P44898 7.42e-159 469 40 6 581 4 HI_0841 Uncharacterized protein HI_0841 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P54496 0.000195 48 29 9 160 3 yqgS Lipoteichoic acid synthase-like YqgS Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04040
Feature type CDS
Gene yejM
Product LPS biosynthesis-modulating metalloenzyme YejM
Location 904960 - 906693 (strand: -1)
Length 1734 (nucleotides) / 577 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1988
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00884 Sulfatase
PF11893 Domain of unknown function (DUF3413)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3083 Cell wall/membrane/envelope biogenesis (M)
Signal transduction mechanisms (T)		 MT Periplasmic protein PbgA/YejM, regulator of the LPS biosynthesis, AlkP superfamily

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07014 uncharacterized protein - -

Protein Sequence

MVTRNQSYREKVSQMISWGHWFALFNIILSLLLGSRYLFIADWPSTFAGRLYAIVSWMGHFSFIVFAIYILILFPLTFVVVSQRLLRVISCALASAGLTLLIFDIAVYQQFQLHLTQLVWDLVINPDEGEMAREWQLIFIGIPIIFLIEMLFATWSWQKLRSLNRQRWGKPLACVFISCFILSHSMSIWADANFYRPITMQRANLPLSYPMTARKFLERHGFINQSEYEQRLMSEGNPAAQSITYPLTPLDYSKDESSYNLLMIVVDGLGNEDVAKLPSLQQFADNNLSFSQHYSAGINNETALFGLFYGISPSYLDSVLSSRKNSALFDALNYRHYQLALFSTNGFKSPLFTQAVLADYSLPTSRSEDNDTTINSWRSWLLKNKQSTPWFSFLQINGDKHTSASQAQLNSQLETIFTTLKESNILDNTVVVVTSNYHQNNDKQDSQWLVNKDTFNLSQSQVPLVIHWPNVTPQKLDKLTSHQDIMTTLMQHVLGVISPADNYSQGEDLFANTRNHPWIFTGDNETLVVFLQDNTLMIDKHGRYALFDKSGKEIQSAKPDLRLLLQVLAEQKRFIER

Flanking regions ( +/- flanking 50bp)

TCAATTGATGAAGGCAATATTCACTAATAAACACAGAAATATTTATAGACATGGTAACGAGAAATCAGTCCTATCGTGAAAAAGTATCCCAAATGATCAGTTGGGGTCACTGGTTTGCGCTGTTTAATATTATTCTAAGCCTTTTGCTTGGGAGCCGTTACCTGTTTATTGCTGATTGGCCAAGTACCTTTGCAGGTCGTCTTTACGCTATTGTCAGTTGGATGGGCCATTTTAGTTTTATCGTGTTTGCTATTTATATCCTTATTCTTTTTCCGTTGACCTTTGTGGTAGTTTCGCAACGATTACTTAGGGTGATATCCTGCGCCTTAGCTAGCGCAGGATTGACATTACTTATTTTTGATATAGCTGTTTACCAGCAATTTCAACTTCATTTGACCCAGTTGGTTTGGGATTTGGTTATCAATCCAGATGAAGGTGAAATGGCGCGAGAATGGCAACTTATCTTTATTGGCATCCCCATTATCTTTCTTATCGAAATGCTATTTGCTACATGGAGTTGGCAAAAGCTGCGCAGCTTAAACCGCCAGCGATGGGGAAAACCATTAGCCTGTGTATTTATTAGTTGCTTTATTTTATCCCACTCTATGTCTATTTGGGCAGATGCTAATTTTTATCGCCCTATTACTATGCAACGTGCAAACTTACCACTGTCTTACCCAATGACTGCACGTAAATTCCTTGAACGGCATGGTTTTATTAATCAATCTGAGTATGAGCAGCGCTTAATGAGCGAGGGTAATCCTGCGGCACAGAGTATCACCTACCCGCTTACACCTCTTGATTATTCTAAAGATGAAAGCTCATATAACTTACTTATGATTGTGGTTGATGGATTAGGTAATGAAGACGTTGCCAAACTACCGAGCTTGCAACAATTTGCTGATAATAACCTCTCTTTCTCTCAGCACTATTCAGCAGGCATAAATAACGAAACGGCGCTGTTTGGATTATTTTATGGCATTTCACCGTCTTACTTAGATAGTGTGTTAAGTAGCCGCAAAAACTCAGCGCTCTTTGACGCTTTAAATTATCGTCACTATCAATTAGCACTATTTTCAACTAACGGATTTAAATCGCCATTATTTACACAAGCGGTGCTGGCTGATTACTCACTACCTACTTCACGTAGTGAGGATAACGACACAACGATTAATAGTTGGCGTTCATGGTTGTTAAAAAATAAACAAAGCACACCTTGGTTCTCTTTCTTACAAATCAACGGTGATAAGCATACATCAGCTTCTCAAGCACAGTTAAATAGTCAATTAGAGACCATTTTTACTACTTTAAAAGAAAGCAACATACTTGATAATACCGTTGTGGTCGTAACGTCAAATTATCATCAGAACAATGATAAACAAGATAGCCAATGGCTTGTTAACAAAGACACTTTTAACTTAAGCCAATCGCAGGTTCCACTGGTAATACATTGGCCTAATGTTACACCACAAAAACTAGATAAACTAACCAGCCACCAAGATATAATGACAACGCTAATGCAACATGTATTAGGTGTTATTAGCCCTGCAGATAACTATTCTCAAGGCGAAGATCTATTTGCTAATACGCGTAATCACCCTTGGATTTTTACTGGTGATAATGAAACTCTAGTGGTCTTTTTACAAGATAATACGTTAATGATAGATAAACATGGCAGATATGCTTTGTTTGATAAATCAGGCAAAGAGATCCAATCCGCCAAACCTGATTTACGCCTATTATTGCAAGTACTTGCTGAGCAAAAACGATTTATTGAGCGTTAGTATTAAAAAAAGACTATAAGTAAAAAGTTAATAACAACTGACGTCACTAT