COG3083


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3083, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Periplasmic protein PbgA/YejM, regulator of the LPS biosynthesis, AlkP superfamily
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)
Signal transduction mechanisms (T)

Occurence in the database

COG3083 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1988 FBDBKF_14910 82213 83982 1 yejM LPS biosynthesis-modulating metalloenzyme YejM Morganella morganii S1
1 group_1988 EHELCC_15715 112289 114058 1 yejM LPS biosynthesis-modulating metalloenzyme YejM Morganella morganii S2
2 group_1988 NLDBIP_16245 112289 114058 1 yejM LPS biosynthesis-modulating metalloenzyme YejM Morganella morganii S4
3 group_1988 LHKJJB_15595 2628 4397 -1 yejM LPS biosynthesis-modulating metalloenzyme YejM Morganella morganii S3
4 group_1988 HKOGLL_14715 1840 3609 -1 yejM LPS biosynthesis-modulating metalloenzyme YejM Morganella morganii S5
5 group_1988 F4V73_RS07710 1611768 1613528 1 yejM LPS biosynthesis-modulating metalloenzyme YejM Morganella psychrotolerans
6 group_1988 PMI_RS04040 904960 906693 -1 yejM LPS biosynthesis-modulating metalloenzyme YejM Proteus mirabilis HI4320