COG3083
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3083, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 7 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Periplasmic protein PbgA/YejM, regulator of the LPS biosynthesis, AlkP superfamily |
---|---|
Function(s) descr. | Cell wall/membrane/envelope biogenesis (M) Signal transduction mechanisms (T) |
Occurence in the database
COG3083 is associated with 7 different proteins (see tab "Protein list" and "Profile") |
The 7 proteins are classified into 1 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1988 | FBDBKF_14910 | 82213 | 83982 | 1 | yejM | LPS biosynthesis-modulating metalloenzyme YejM | Morganella morganii S1 |
1 | group_1988 | EHELCC_15715 | 112289 | 114058 | 1 | yejM | LPS biosynthesis-modulating metalloenzyme YejM | Morganella morganii S2 |
2 | group_1988 | NLDBIP_16245 | 112289 | 114058 | 1 | yejM | LPS biosynthesis-modulating metalloenzyme YejM | Morganella morganii S4 |
3 | group_1988 | LHKJJB_15595 | 2628 | 4397 | -1 | yejM | LPS biosynthesis-modulating metalloenzyme YejM | Morganella morganii S3 |
4 | group_1988 | HKOGLL_14715 | 1840 | 3609 | -1 | yejM | LPS biosynthesis-modulating metalloenzyme YejM | Morganella morganii S5 |
5 | group_1988 | F4V73_RS07710 | 1611768 | 1613528 | 1 | yejM | LPS biosynthesis-modulating metalloenzyme YejM | Morganella psychrotolerans |
6 | group_1988 | PMI_RS04040 | 904960 | 906693 | -1 | yejM | LPS biosynthesis-modulating metalloenzyme YejM | Proteus mirabilis HI4320 |