Homologs in group_1962

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14700 FBDBKF_14700 74.2 Morganella morganii S1 pabC aminodeoxychorismate lyase
EHELCC_15505 EHELCC_15505 74.2 Morganella morganii S2 pabC aminodeoxychorismate lyase
NLDBIP_16035 NLDBIP_16035 74.2 Morganella morganii S4 pabC aminodeoxychorismate lyase
LHKJJB_15805 LHKJJB_15805 74.2 Morganella morganii S3 pabC aminodeoxychorismate lyase
HKOGLL_14925 HKOGLL_14925 74.2 Morganella morganii S5 pabC aminodeoxychorismate lyase
PMI_RS04240 PMI_RS04240 42.9 Proteus mirabilis HI4320 pabC aminodeoxychorismate lyase

Distribution of the homologs in the orthogroup group_1962

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1962

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28305 4.26e-76 235 47 5 273 1 pabC Aminodeoxychorismate lyase Escherichia coli (strain K12)
Q56693 4.55e-45 156 36 1 246 3 pabC Aminodeoxychorismate lyase Vibrio harveyi
Q9KQI0 4.47e-40 143 34 1 246 3 pabC Aminodeoxychorismate lyase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P28821 1.23e-14 75 25 7 243 3 pabC Aminodeoxychorismate lyase Bacillus subtilis (strain 168)
P54692 4.98e-14 73 27 6 255 3 dat D-alanine aminotransferase Bacillus licheniformis
Q8CS41 9.03e-14 73 27 9 263 3 dat D-alanine aminotransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNG0 9.03e-14 73 27 9 263 3 dat D-alanine aminotransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
O29329 2.08e-12 69 25 8 241 1 ilvE Putative branched-chain-amino-acid aminotransferase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P54694 8.47e-12 67 25 7 265 3 dat D-alanine aminotransferase Staphylococcus haemolyticus
Q6G8H7 8.72e-12 67 26 6 245 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MSSA476)
Q5HF24 2.87e-11 65 26 6 245 3 dat D-alanine aminotransferase Staphylococcus aureus (strain COL)
P99090 3.13e-11 65 26 6 245 1 dat D-alanine aminotransferase Staphylococcus aureus (strain N315)
P63511 3.13e-11 65 26 6 245 3 dat D-alanine aminotransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q8NW24 3.25e-11 65 26 6 245 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MW2)
Q6GFV1 3.25e-11 65 26 6 245 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MRSA252)
Q58414 7.77e-11 64 25 7 260 3 ilvE Putative branched-chain-amino-acid aminotransferase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q92B90 6.86e-09 58 26 7 246 3 dat D-alanine aminotransferase Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
O07597 1.46e-08 58 25 8 264 3 dat D-alanine aminotransferase Bacillus subtilis (strain 168)
P0DJL9 3.95e-08 56 25 9 275 3 dat D-alanine aminotransferase Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
G2JZ74 4.21e-08 56 25 9 275 3 dat D-alanine aminotransferase Listeria monocytogenes serotype 1/2a (strain 10403S)
P0AB80 2.72e-07 54 24 8 250 1 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli (strain K12)
P0AB81 2.72e-07 54 24 8 250 3 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AB82 2.72e-07 54 24 8 250 3 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli O157:H7
P54693 9.25e-07 52 24 3 241 3 dat D-alanine aminotransferase Lysinibacillus sphaericus
P19938 1.01e-06 52 23 8 251 1 dat D-alanine aminotransferase Bacillus sp. (strain YM-1)
Q8W0Z7 3.31e-06 51 23 8 262 2 At3g05190 Branched-chain-amino-acid aminotransferase-like protein 1 Arabidopsis thaliana
P0A1A5 9.43e-06 49 22 8 249 1 ilvE Branched-chain-amino-acid aminotransferase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1A6 9.43e-06 49 22 8 249 3 ilvE Branched-chain-amino-acid aminotransferase Salmonella typhi
Q79FW0 2.42e-05 48 23 6 215 1 Rv0812 Bifunctional aminodeoxychorismate lyase / D-amino acid transaminase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
O27481 6.23e-05 47 19 7 256 3 ilvE Putative branched-chain-amino-acid aminotransferase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
K7QHS5 0.000582 44 27 2 123 1 BCAT2 Branched-chain amino acid aminotransferase 2, chloroplastic Humulus lupulus
Q9AKE5 0.000862 43 22 6 211 3 ilvE Probable branched-chain-amino-acid aminotransferase Rickettsia typhi (strain ATCC VR-144 / Wilmington)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07495
Feature type CDS
Gene pabC
Product aminodeoxychorismate lyase
Location 1566712 - 1567551 (strand: -1)
Length 840 (nucleotides) / 279 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1962
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01063 Amino-transferase class IV

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0115 Amino acid transport and metabolism (E)
Coenzyme transport and metabolism (H)
EH Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] Folate biosynthesis
Biosynthesis of cofactors
-

Protein Sequence

MTQQTKYLVNGVPCDTITIADRSVQFGDGCFTTMRIADGKPVLLARHLQRLHESTARLGLADVDDSLLTSWVMQAAEGSEDAVLKVIISAGEQGRGYLRAETPPVVILILTAYPDNYATLRETGLSVVKSPVSLGINPYLAGLKHLNRLEQVLIRQYVAQQQADEAIVTDVSGILTEGCSANLFWRCGDDVFTPSLANAGVAGIMRAHILEVLKDSPYRCYETARYPQVLTGADEVIMCNALMPVMPVNDIRFDGDNHRYYTSRSLFMYLQPHCTAASA

Flanking regions ( +/- flanking 50bp)

CGGATGCAAAGTTCCGGTTATATAATAAGCGGTAAAACAATAAGTTGGCTATGACACAACAGACAAAATACCTGGTCAATGGTGTACCGTGCGACACTATCACTATTGCGGATCGCAGTGTACAGTTCGGTGACGGCTGTTTTACCACCATGCGTATTGCGGACGGCAAACCTGTGTTGCTGGCCCGCCATCTGCAACGTCTGCACGAGAGTACGGCAAGGCTGGGTCTGGCGGATGTGGATGACTCACTTCTGACCTCATGGGTCATGCAGGCGGCTGAAGGTAGCGAAGATGCGGTACTCAAAGTGATCATCAGTGCCGGAGAGCAGGGACGCGGCTATTTACGGGCGGAAACACCCCCGGTTGTGATCCTTATTCTCACGGCGTATCCGGACAATTATGCGACTCTGCGGGAAACCGGGCTGTCTGTGGTGAAAAGCCCTGTATCGCTGGGCATCAATCCTTATCTTGCCGGTCTTAAACATCTCAACCGGCTGGAACAGGTGCTTATCCGTCAGTATGTGGCGCAGCAGCAGGCGGACGAAGCCATTGTTACGGATGTGTCGGGCATTCTGACGGAAGGGTGCAGTGCCAATCTGTTCTGGCGTTGTGGTGATGATGTTTTTACACCGTCACTGGCAAACGCCGGTGTGGCGGGGATTATGCGGGCGCACATTTTAGAGGTGCTGAAAGACAGCCCTTACCGTTGCTATGAAACTGCGCGTTATCCGCAGGTACTGACAGGTGCCGACGAAGTGATTATGTGTAATGCGTTAATGCCGGTGATGCCGGTTAACGATATCCGCTTTGATGGTGATAATCACCGGTATTACACATCCCGTTCATTATTTATGTATCTTCAGCCCCATTGTACGGCGGCATCAGCCTGATCACACAGAGTATATTACTGATGAAAAAAACACGGATTATTCTTGTCACT