Homologs in group_1959

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14685 FBDBKF_14685 80.4 Morganella morganii S1 holB DNA polymerase III, delta prime subunit
EHELCC_15490 EHELCC_15490 80.4 Morganella morganii S2 holB DNA polymerase III, delta prime subunit
NLDBIP_16020 NLDBIP_16020 80.4 Morganella morganii S4 holB DNA polymerase III, delta prime subunit
LHKJJB_15820 LHKJJB_15820 80.4 Morganella morganii S3 holB DNA polymerase III, delta prime subunit
HKOGLL_14940 HKOGLL_14940 80.4 Morganella morganii S5 holB DNA polymerase III, delta prime subunit
PMI_RS04255 PMI_RS04255 50.0 Proteus mirabilis HI4320 holB DNA polymerase III subunit delta'

Distribution of the homologs in the orthogroup group_1959

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1959

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O69170 1.91e-106 317 51 2 337 3 holB DNA polymerase III subunit delta' Yersinia pestis
P28631 1.94e-84 261 47 2 322 1 holB DNA polymerase III subunit delta' Escherichia coli (strain K12)
Q8K9J2 1e-64 210 33 2 309 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57435 2.72e-64 209 33 2 326 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AG8 2.13e-54 184 29 6 338 3 holB DNA polymerase III subunit delta' Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P43748 4.54e-54 182 36 4 318 3 holB DNA polymerase III subunit delta' Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P52024 3.39e-41 149 33 5 334 3 holB DNA polymerase III subunit delta' Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P57553 2.97e-15 79 31 4 189 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P37540 7.64e-15 77 30 6 204 3 holB DNA polymerase III subunit delta' Bacillus subtilis (strain 168)
Q8K983 2.66e-14 76 27 4 200 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P09122 8.89e-13 72 25 6 276 3 dnaX DNA polymerase III subunit gamma/tau Bacillus subtilis (strain 168)
P9WNT9 1.57e-11 68 30 1 149 1 dnaX DNA polymerase III subunit gamma/tau Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WNT8 1.57e-11 68 30 1 149 3 dnaX DNA polymerase III subunit gamma/tau Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P63976 1.57e-11 68 30 1 149 3 dnaX DNA polymerase III subunit gamma/tau Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P43746 1.61e-11 68 28 2 200 3 dnaX DNA polymerase III subunit tau/gamma Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89A95 6.82e-11 66 24 2 192 3 dnaX DNA polymerase III subunit gamma Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P06710 2.91e-10 65 27 3 221 1 dnaX DNA polymerase III subunit tau Escherichia coli (strain K12)
P74876 1.36e-09 62 27 3 221 3 dnaX DNA polymerase III subunit tau Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P75177 1.35e-07 56 22 2 157 3 dnaX DNA polymerase III subunit gamma/tau Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
P75105 3.11e-07 54 32 5 139 4 MPN_007 Uncharacterized protein MG007 homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
F4HW65 5.34e-07 55 32 4 156 1 At1g14460 Protein STICHEL-like 1 Arabidopsis thaliana
P47658 4.6e-06 52 22 6 230 3 dnaX DNA polymerase III subunit gamma/tau Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
O14003 7.95e-06 50 25 6 174 1 rfc3 Replication factor C subunit 3 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O64728 1.09e-05 50 29 3 135 1 STI Protein STICHEL Arabidopsis thaliana
P38629 8.47e-05 47 26 6 197 1 RFC3 Replication factor C subunit 3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9D0F6 0.000435 45 34 1 78 1 Rfc5 Replication factor C subunit 5 Mus musculus
P40937 0.000448 45 34 1 78 1 RFC5 Replication factor C subunit 5 Homo sapiens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07480
Feature type CDS
Gene holB
Product DNA polymerase III subunit delta'
Location 1564027 - 1565028 (strand: -1)
Length 1002 (nucleotides) / 333 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1959
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF09115 DNA polymerase III, delta subunit, C terminal
PF13177 DNA polymerase III, delta subunit
PF21500 DNA polymerase III subunit delta', AAA+ ATPase lid domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0470 Replication, recombination and repair (L) L DNA polymerase III, delta prime subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MNWYPWLNPVYRQLATAWLSGQGHHALLLYGIAGTGTDELAYALTRLRMCQRPEGIKSCGECHSCKLMLAGTHPDFYLLQPEKGKSSLGVDAVRTITEKLYDRSQLSGAKLVHIPQAELLTEAAANALLKTLEEPTDNTWFVLQSPRLDLLLPTLRSRCFAYHLATPPVASGLQWLQRELPQSDATDRQTALNLCHNAPAAARDLLMTPDWAARQALFTQLLQAVHSGDFLSLLSAVNHQEPEKRINWLVTLLMDAVKYQQNMAPACLNQDQSALITLLAGRYSSAHLLAAADSWLTCRHRLLTVTGINHELLLVEQLLHQETLFSAPPLSTQ

Flanking regions ( +/- flanking 50bp)

CGCAGCGCATTACAGCACTGGCTCTTACAGCAGAAGCAGAAAGAGGCGTAATGAACTGGTATCCGTGGCTCAATCCTGTTTACCGTCAACTGGCGACGGCATGGCTCTCCGGTCAGGGTCACCATGCGCTGTTGCTGTACGGTATTGCGGGCACCGGGACTGATGAACTGGCGTATGCACTGACTCGTCTGCGTATGTGTCAGCGTCCGGAAGGCATCAAAAGCTGCGGGGAATGCCACAGTTGCAAACTGATGCTGGCGGGCACACATCCCGATTTTTATCTGTTGCAGCCGGAAAAAGGCAAAAGTTCGCTGGGGGTTGATGCGGTACGCACAATCACTGAAAAATTGTATGACCGCTCACAACTGAGCGGCGCAAAACTGGTGCATATTCCGCAGGCGGAGCTGCTGACAGAAGCGGCTGCCAATGCGCTGCTGAAAACCCTCGAAGAGCCGACAGACAATACCTGGTTTGTATTACAAAGCCCGCGCCTTGATCTGTTGCTGCCGACTCTGCGCAGCCGCTGTTTTGCGTATCATCTGGCAACACCGCCGGTTGCATCAGGGCTGCAATGGCTGCAACGGGAACTGCCGCAGTCGGATGCCACAGACCGGCAAACGGCACTGAATCTTTGTCACAATGCACCGGCAGCCGCGCGGGACTTACTGATGACACCTGACTGGGCAGCCCGGCAGGCGCTGTTTACACAGCTTTTGCAGGCAGTACACAGTGGTGATTTTTTATCTCTGCTGTCTGCTGTTAACCATCAGGAGCCGGAAAAACGTATCAACTGGCTGGTTACATTGCTGATGGATGCGGTTAAATATCAGCAAAACATGGCTCCCGCCTGTCTTAATCAGGATCAATCCGCGCTTATTACCCTGCTGGCGGGGCGCTACAGCAGTGCACATTTACTGGCAGCGGCTGACAGTTGGCTGACCTGCCGCCACCGGTTGCTGACTGTTACCGGCATCAACCATGAGTTGCTGCTGGTGGAACAATTATTACATCAGGAAACGCTGTTTTCTGCACCACCTTTATCAACCCAATGAGTTTATTATGTTTTTAGTCGATTCCCATTGCCACCTTGATTGTCTGGATT