Orthogroup:group_1959


Homologs in group_1959

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14685 FBDBKF_14685 Morganella morganii S1 holB DNA polymerase III, delta prime subunit
EHELCC_15490 EHELCC_15490 Morganella morganii S2 holB DNA polymerase III, delta prime subunit
NLDBIP_16020 NLDBIP_16020 Morganella morganii S4 holB DNA polymerase III, delta prime subunit
LHKJJB_15820 LHKJJB_15820 Morganella morganii S3 holB DNA polymerase III, delta prime subunit
HKOGLL_14940 HKOGLL_14940 Morganella morganii S5 holB DNA polymerase III, delta prime subunit
F4V73_RS07480 F4V73_RS07480 Morganella psychrotolerans holB DNA polymerase III subunit delta'
PMI_RS04255 PMI_RS04255 Proteus mirabilis HI4320 holB DNA polymerase III subunit delta'

Distribution of group_1959 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1959 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1959

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1959.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 holB 7

Product

# Product Occurence
1 DNA polymerase III, delta prime subunit 5
2 DNA polymerase III subunit delta' 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0470 7 L Replication, recombination and repair (L) DNA polymerase III, delta prime subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02341 7 DNA polymerase III subunit delta' [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF09115 7 DNA polymerase III, delta subunit, C terminal
PF13177 7 DNA polymerase III, delta subunit
PF21500 7 DNA polymerase III subunit delta', AAA+ ATPase lid domain

Annotations of the 56 SwissProt hits

Annotation Number of occurrences
DNA polymerase III subunit delta' 8
DNA polymerase III subunit gamma 3
DNA polymerase III subunit gamma/tau 6
DNA polymerase III subunit tau 2
DNA polymerase III subunit tau/gamma 1
Probable replication factor C subunit 5 2
Protein STICHEL 1
Protein STICHEL-like 1 1
Protein STICHEL-like 3 1
Replication factor C small subunit 22
Replication factor C subunit 3 4
Replication factor C subunit 5 3
Uncharacterized protein MG007 1
Uncharacterized protein MG007 homolog 1

Protein length

Min length 328
Max length 333
Mean length (sd) 331.6 (1.6)
Median length 332.0

Protein length distribution