Homologs in group_1945

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14605 FBDBKF_14605 53.7 Morganella morganii S1 fimA Pilin (type 1 fimbrial protein)
EHELCC_15410 EHELCC_15410 53.7 Morganella morganii S2 fimA Pilin (type 1 fimbrial protein)
NLDBIP_15940 NLDBIP_15940 53.7 Morganella morganii S4 fimA Pilin (type 1 fimbrial protein)
LHKJJB_15900 LHKJJB_15900 53.7 Morganella morganii S3 fimA Pilin (type 1 fimbrial protein)
HKOGLL_15020 HKOGLL_15020 53.7 Morganella morganii S5 fimA Pilin (type 1 fimbrial protein)
F4V73_RS10890 F4V73_RS10890 29.8 Morganella psychrotolerans - fimbrial protein

Distribution of the homologs in the orthogroup group_1945

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1945

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37920 1.57e-14 71 29 7 194 3 fimA Type-1 fimbrial protein, A chain Salmonella typhi
P37921 1.56e-13 68 29 8 195 1 fimA Type-1 fimbrial protein, A chain Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12730 3.44e-13 67 33 3 150 1 sfaA S-fimbrial protein subunit SfaA Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P62605 3.99e-13 67 35 5 151 3 pilC Type-1 fimbrial protein, C chain Escherichia coli
P62606 3.99e-13 67 35 5 151 3 pilC Type-1 fimbrial protein, C chain Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P43660 4.83e-13 67 30 6 188 3 lpfA Long polar fimbria protein A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P55223 3.17e-11 62 30 9 196 3 None Fimbrial subunit type 1 Salmonella typhimurium
Q8X5K5 5.23e-11 62 26 5 191 2 lpfA Probable major fimbrial subunit LpfA Escherichia coli O157:H7
Q8X5L0 1.2e-10 60 31 5 151 2 lpfE Probable fimbrial subunit LpfE Escherichia coli O157:H7
P39264 7.6e-09 55 27 4 151 1 fimI Fimbrin-like protein FimI Escherichia coli (strain K12)
P75855 1.01e-07 52 31 7 153 1 elfA Fimbrial subunit ElfA Escherichia coli (strain K12)
P11312 2.78e-07 51 31 6 163 3 F17a-A F17 fimbrial protein Escherichia coli
Q8X582 3.82e-07 51 29 5 152 1 elfA Laminin-binding fimbrial subunit ElfA Escherichia coli O157:H7
P43664 5.26e-07 50 29 6 155 3 lpfE Protein LpfE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P08189 2.24e-06 49 25 3 152 1 fimF Protein FimF Escherichia coli (strain K12)
P12903 3.72e-06 48 33 6 153 1 fim Fimbrial subunit type 1 Klebsiella pneumoniae
Q47223 4.82e-06 48 27 6 192 1 fimA Type-1 fimbrial protein, A chain Escherichia coli
P45992 1.1e-05 47 28 6 170 3 hifD Minor fimbrial subunit HifD Haemophilus influenzae
P77789 1.23e-05 47 28 1 102 3 ydeS Uncharacterized fimbrial-like protein YdeS Escherichia coli (strain K12)
P12266 3.22e-05 45 33 7 156 1 None Fimbrial subunit type 1 Klebsiella pneumoniae
P22595 0.000117 44 26 3 156 3 fimA Type-1 fimbrial protein subunit Serratia marcescens
P37926 0.000161 43 28 6 150 3 fimF Fimbrial-like protein FimF Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P04128 0.000181 43 31 4 151 1 fimA Type-1 fimbrial protein, A chain Escherichia coli (strain K12)
P42913 0.000383 43 34 1 58 2 yraH Uncharacterized fimbrial-like protein YraH Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07400
Feature type CDS
Gene -
Product fimbrial protein
Location 1545510 - 1546076 (strand: -1)
Length 567 (nucleotides) / 188 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1945
Orthogroup size 7
N. genomes 6

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07345 major type 1 subunit fimbrin (pilin) Shigellosis
Pertussis		 -

Protein Sequence

MFNLKSKLMVSALIIFTATSFADDSDPVEIAGEPKGPGYIDGSIKFKGLITDSSCNITQKDQEVELGTHSAAVLKEINSRTNPVEFTIDIKDCSLSMSSLTIAMNGVAHADNNAIFALNTDEESAGKVGIQISTEAGDPVTPAGVSETITLRQDSRDYSKTYAANYLATGLATPGPANATVNYTVTYN

Flanking regions ( +/- flanking 50bp)

TATTACGTTGGTTATTAATAATATAACCAAATATATAAGGTTTAATATTGATGTTTAATTTAAAAAGTAAGTTAATGGTTTCAGCTTTGATTATTTTTACAGCAACCTCATTTGCAGATGATTCTGATCCTGTTGAAATAGCCGGGGAGCCAAAAGGTCCCGGATATATTGACGGAAGTATTAAATTTAAAGGTTTAATAACTGACTCAAGTTGTAATATTACACAAAAAGATCAGGAGGTTGAACTTGGAACACATTCTGCAGCTGTTTTAAAAGAAATAAACAGCCGTACCAATCCTGTGGAATTTACTATTGATATTAAAGATTGTTCTCTGTCTATGAGTTCATTAACGATAGCAATGAATGGTGTAGCTCATGCAGATAATAATGCCATTTTCGCACTTAATACAGATGAAGAAAGTGCCGGTAAGGTTGGTATCCAAATTTCGACAGAAGCAGGTGACCCGGTTACCCCTGCAGGCGTTAGCGAAACAATCACATTACGTCAGGATTCACGCGATTATTCAAAAACGTATGCTGCTAACTATCTGGCGACCGGTCTGGCAACACCGGGACCTGCAAATGCAACCGTAAACTATACCGTTACTTATAATTAATTAATTACAGGGTGGTAATACGGATTGCTGCCCTGTTATATCAGATAATT