Homologs in group_510

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01045 FBDBKF_01045 82.4 Morganella morganii S1 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family
EHELCC_00500 EHELCC_00500 82.4 Morganella morganii S2 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family
NLDBIP_02960 NLDBIP_02960 82.4 Morganella morganii S4 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family
LHKJJB_04475 LHKJJB_04475 82.4 Morganella morganii S3 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family
HKOGLL_02570 HKOGLL_02570 82.4 Morganella morganii S5 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family
PMI_RS09095 PMI_RS09095 43.1 Proteus mirabilis HI4320 - tetratricopeptide repeat protein

Distribution of the homologs in the orthogroup group_510

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_510

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76576 2.33e-58 185 46 1 205 1 yfgM Ancillary SecYEG translocon subunit Escherichia coli (strain K12)
P43989 1.95e-30 114 34 5 205 1 HI_0370 Ancillary SecYEG translocon subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O52728 2.44e-28 108 33 5 204 3 1057 Ancillary SecYEG translocon subunit Aggregatibacter actinomycetemcomitans
P57663 2.67e-11 63 26 0 119 3 BU608 Ancillary SecYEG translocon subunit Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O51880 4.1e-10 60 24 0 125 3 BUsg_583 Ancillary SecYEG translocon subunit Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07120
Feature type CDS
Gene -
Product tetratricopeptide repeat protein
Location 1478385 - 1479002 (strand: -1)
Length 618 (nucleotides) / 205 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_510
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF09976 Tetratricopeptide repeat-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2976 Signal transduction mechanisms (T) T Putative negative regulator of RcsB-dependent stress response, UPF0070 family

Protein Sequence

MEVYTTENEQVSVLKNFFVENGKAIAAGLIIGIGGIVGWNYYQSHQVTQLQDAAVAYEAATVVKGTAEEQLTRLKLFAKEANNTYGAFAGLDLAQKSVESNDLPGAEAALSAALPKAENEELKDLINARLARVQLGQGNADAALSTAGNIKGKGWAAYAQDIRGDALLHKGDVKGAQEAYTTGIQSEGAGTIKSVMTFKLDNLAG

Flanking regions ( +/- flanking 50bp)

GAGCGGGTTATCTGCCCGTCTGAGCGAACTTTTAGGTTAAGGAGAGACGCGTGGAAGTCTATACCACAGAAAATGAACAGGTATCAGTGCTGAAGAATTTCTTTGTCGAAAACGGCAAAGCGATTGCAGCAGGATTGATCATCGGTATCGGCGGTATTGTCGGCTGGAATTACTATCAGTCTCATCAGGTCACTCAGTTACAGGATGCAGCCGTTGCGTATGAAGCGGCGACTGTGGTGAAAGGGACGGCAGAAGAGCAGTTAACCCGTCTGAAATTATTCGCAAAAGAAGCCAATAATACCTATGGCGCTTTTGCCGGTCTTGATTTGGCTCAGAAATCAGTTGAAAGCAATGATTTGCCGGGTGCCGAAGCGGCACTGAGCGCGGCATTGCCGAAAGCAGAAAATGAAGAGTTAAAAGATCTTATTAACGCACGTCTGGCCCGCGTTCAGTTGGGTCAGGGAAATGCAGATGCCGCGCTGAGTACAGCCGGTAATATTAAAGGGAAAGGCTGGGCGGCTTACGCACAGGATATCCGTGGCGATGCCCTGTTACATAAAGGGGATGTGAAAGGCGCGCAGGAAGCCTACACCACAGGTATTCAGAGTGAAGGTGCCGGGACTATCAAATCCGTTATGACATTTAAACTCGATAACTTAGCCGGGTGAGAGGACTATTAATAATGCAACTGCGTAAGACACTCCTGGTTGGTTTCGTT