COG2976


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2976, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Putative negative regulator of RcsB-dependent stress response, UPF0070 family
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG2976 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_510 FBDBKF_01045 189932 190549 -1 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family Morganella morganii S1
1 group_510 EHELCC_00500 118319 118936 1 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family Morganella morganii S2
2 group_510 NLDBIP_02960 561200 561817 -1 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family Morganella morganii S4
3 group_510 LHKJJB_04475 168441 169058 -1 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family Morganella morganii S3
4 group_510 HKOGLL_02570 118524 119141 1 yfgM Putative negative regulator of RcsB-dependent stress response, UPF0070 family Morganella morganii S5
5 group_510 F4V73_RS07120 1478385 1479002 -1 tetratricopeptide repeat protein Morganella psychrotolerans
6 group_510 PMI_RS09095 1980540 1981160 -1 tetratricopeptide repeat protein Proteus mirabilis HI4320