Homologs in group_4067

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4067

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4067

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07035
Feature type CDS
Gene -
Product type VI secretion system ImpA family N-terminal domain-containing protein
Location 1460550 - 1461836 (strand: -1)
Length 1287 (nucleotides) / 428 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_4067
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF06812 ImpA, N-terminal, type VI secretion system

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3515 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component TssA1/VasJ/EvfE, contains ImpA_N domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11902 type VI secretion system protein ImpA Biofilm formation - Pseudomonas aeruginosa -

Protein Sequence

MADSDARLSMVYFLHPKTQAEGEGKRMKLSQDERKALLLPISETQPQGRYLKADSSLYRPLRNLFNIAQSSLRKLLQQTEAEDRALHQQMMLSDQAALADALFPVLRCTARDLSLTGWFINSQILLDPTLEALELCLSWFSQQITAHWESLPPQHCDDAGAGESKLQELALFMGSGTESCLFYSAVLLLPVTDDMAYYHYLQQQRRAQTTDFPPLTPDARAAARQRIDFLSACLAHLQPLVPFFAAQNSTTDVFPGFFINLLTDYRLAVMTVCGLPLSEKQAEESPPQPHTEPETVAEKSRPAQAAPHPGIPDLQSLSQRNHYNRDVALHQLRDISLYFRRSEPHSPLSYLLEKSIRWGQMSLSELWQEILLEDNSSLLDRIFSLTGLNEIQMATLPELGNAPGSAGDKAMDKNPDSPADARNTALRW

Flanking regions ( +/- flanking 50bp)

CCATAATATTCTGCTCTCTTCTTCGCCGTAAACCTAAAAAATCCCCCCGCATGGCTGACAGTGATGCCCGTTTAAGTATGGTTTACTTTCTGCATCCGAAAACACAGGCGGAAGGCGAAGGGAAGCGAATGAAATTGTCTCAGGATGAGCGCAAAGCACTGTTGTTGCCAATCAGTGAAACACAGCCGCAGGGGCGCTATTTAAAGGCAGACAGTAGTCTGTACCGCCCGCTGCGTAACCTGTTTAATATTGCACAATCCTCATTACGCAAGCTGTTACAGCAAACAGAGGCAGAAGACCGGGCGCTGCATCAGCAGATGATGCTCAGTGATCAGGCGGCGCTCGCCGATGCGCTTTTCCCTGTACTACGCTGTACCGCCCGCGATTTAAGCCTTACCGGCTGGTTTATCAACAGTCAGATTTTACTGGACCCTACCCTTGAGGCACTTGAACTGTGCCTGTCCTGGTTTTCGCAGCAGATAACCGCGCACTGGGAATCGCTTCCTCCGCAGCATTGTGATGATGCCGGTGCCGGAGAGAGTAAATTGCAGGAGCTGGCACTGTTTATGGGGTCAGGGACGGAAAGCTGCCTGTTTTACAGTGCGGTTTTACTGCTGCCGGTGACAGATGACATGGCGTATTACCACTATCTGCAACAGCAGCGCCGTGCCCAAACTACGGATTTTCCGCCACTGACACCAGACGCCCGCGCGGCGGCACGTCAGCGCATTGATTTTCTTTCTGCCTGCCTGGCGCACTTGCAGCCACTGGTGCCGTTCTTTGCTGCTCAAAATAGTACGACTGATGTTTTCCCCGGTTTTTTTATTAATTTACTGACTGACTACCGGCTGGCGGTGATGACAGTCTGCGGGCTGCCGTTATCTGAAAAACAGGCGGAAGAAAGCCCTCCACAACCTCATACAGAGCCGGAGACTGTCGCAGAAAAATCCCGTCCGGCGCAGGCAGCACCGCATCCGGGTATTCCGGATTTACAATCGCTCAGCCAGCGTAATCACTATAACCGGGATGTGGCGTTGCATCAGTTACGCGACATTTCGCTCTATTTCAGGCGGAGCGAGCCGCACAGCCCGCTCTCCTATCTGCTGGAAAAATCTATCCGCTGGGGTCAGATGTCGTTATCTGAACTTTGGCAGGAAATTTTACTGGAAGATAACAGTTCATTACTGGACCGGATTTTTTCTCTGACCGGACTGAATGAAATACAAATGGCCACACTGCCTGAGCTCGGTAATGCGCCGGGTTCAGCAGGGGATAAGGCTATGGATAAAAACCCGGACTCACCGGCGGATGCCCGTAATACGGCACTTCGCTGGTAATTACAACACATAATAAGGATAGTTATGGCCAGTATTTATATGCGGATTGA