Homologs in group_471

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00705 FBDBKF_00705 81.3 Morganella morganii S1 flgD Flagellar hook-capping protein FlgD
EHELCC_00840 EHELCC_00840 81.3 Morganella morganii S2 flgD Flagellar hook-capping protein FlgD
NLDBIP_02620 NLDBIP_02620 81.3 Morganella morganii S4 flgD Flagellar hook-capping protein FlgD
LHKJJB_04135 LHKJJB_04135 81.3 Morganella morganii S3 flgD Flagellar hook-capping protein FlgD
HKOGLL_02910 HKOGLL_02910 81.3 Morganella morganii S5 flgD Flagellar hook-capping protein FlgD
PMI_RS08065 PMI_RS08065 40.2 Proteus mirabilis HI4320 - flagellar hook assembly protein FlgD

Distribution of the homologs in the orthogroup group_471

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_471

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1I9 1.38e-40 143 34 7 275 1 flgD Basal-body rod modification protein FlgD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1J0 1.38e-40 143 34 7 275 3 flgD Basal-body rod modification protein FlgD Salmonella typhi
P75936 5.5e-38 136 36 6 245 3 flgD Basal-body rod modification protein FlgD Escherichia coli (strain K12)
Q8K9K7 1.07e-21 93 30 7 248 3 flgD Basal-body rod modification protein FlgD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57421 1.53e-17 82 26 5 232 3 flgD Basal-body rod modification protein FlgD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P23455 5.12e-07 51 46 0 47 3 ylxG FlaA locus uncharacterized protein YlxG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS06715
Feature type CDS
Gene -
Product flagellar hook capping FlgD N-terminal domain-containing protein
Location 1395503 - 1396333 (strand: -1)
Length 831 (nucleotides) / 276 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_471
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03963 Flagellar hook capping protein - N-terminal region
PF13860 FlgD Ig-like domain
PF13861 FlgD Tudor-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1843 Cell motility (N) N Flagellar hook-capping protein FlgD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02389 flagellar basal-body rod modification protein FlgD Flagellar assembly -

Protein Sequence

MGINATNNESTNNDIDTQKKPQKSQSDDMRDTFLQMIVTQMQNQDPTKPMDNTDLTSQLAQIASLESMNKLNDSVTGISKQINSGQSLQATQLVGKSVLIPGSDLVLTPLNTDGTQKLVKPTNPLAGTDESVLPFADDKPDDGNSGNNEGSNTGYESSPFGFFLGKPADKIDITIRDKNKAIVRTITIEGETKPDLYDRTWDGRNDNGELVADLKGKYTFEIKASMKGEEIAESNLIRLKYAKVNGVTPGADAPLLDVGIGHSVLLSEIFKVYPAN

Flanking regions ( +/- flanking 50bp)

AAAACCCTGTTGCAGAAAACATTAACACTGGGGCAGTAACGGAGTAAATCATGGGAATTAATGCCACGAACAATGAATCAACGAATAACGATATTGACACTCAGAAAAAGCCGCAAAAAAGCCAGAGTGATGATATGCGGGATACGTTTTTGCAGATGATCGTCACGCAGATGCAGAACCAGGATCCGACCAAACCGATGGATAACACGGATCTTACCAGCCAACTGGCGCAAATTGCATCACTTGAGAGCATGAATAAGCTCAATGACAGTGTGACCGGTATTTCCAAACAAATTAATTCGGGTCAGTCATTGCAGGCAACTCAGCTGGTCGGAAAAAGCGTGCTTATTCCCGGCAGTGATTTAGTCCTGACTCCGCTGAATACTGACGGTACACAGAAATTAGTGAAACCAACGAATCCGCTGGCGGGTACTGATGAATCTGTTCTGCCGTTTGCCGATGATAAACCGGATGACGGAAACAGCGGGAATAACGAAGGCAGTAATACCGGCTATGAGTCTTCACCGTTCGGCTTCTTCCTCGGTAAACCAGCCGACAAAATTGATATCACTATCCGTGATAAAAACAAAGCCATTGTCCGGACTATTACGATTGAGGGTGAAACCAAACCGGATCTTTATGACCGGACCTGGGATGGCCGCAATGATAATGGTGAGCTGGTTGCTGACCTTAAAGGTAAATATACCTTTGAAATCAAAGCCAGCATGAAGGGCGAAGAGATCGCAGAAAGCAATCTTATCCGACTGAAATACGCAAAAGTTAACGGAGTAACACCGGGGGCGGATGCACCGTTGCTGGATGTGGGCATTGGTCACAGTGTGTTGTTATCTGAAATATTTAAAGTGTATCCGGCTAATTAATAAGTAAACCCAATTGTCATGGAGGTGACATGTCTTTTTCACAAGCAGTC