Homologs in group_270

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05345 FBDBKF_05345 86.0 Morganella morganii S1 hns DNA-binding protein H-NS
EHELCC_12245 EHELCC_12245 86.0 Morganella morganii S2 hns DNA-binding protein H-NS
NLDBIP_12585 NLDBIP_12585 86.0 Morganella morganii S4 hns DNA-binding protein H-NS
LHKJJB_12445 LHKJJB_12445 86.0 Morganella morganii S3 hns DNA-binding protein H-NS
HKOGLL_11060 HKOGLL_11060 86.0 Morganella morganii S5 hns DNA-binding protein H-NS
PMI_RS07205 PMI_RS07205 64.9 Proteus mirabilis HI4320 hns histone-like nucleoid-structuring protein H-NS
PMI_RS18630 PMI_RS18630 37.9 Proteus mirabilis HI4320 - H-NS family nucleoid-associated regulatory protein

Distribution of the homologs in the orthogroup group_270

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_270

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0DOA5 8.94e-65 196 70 1 136 1 hns DNA-binding protein H-NS Yersinia enterocolitica
P18955 6.1e-58 179 70 0 135 3 hns DNA-binding protein H-NS Serratia marcescens
P18818 4.51e-55 171 63 1 135 3 hns DNA-binding protein H-NS Proteus vulgaris
P09120 5.48e-55 171 69 0 136 1 hns DNA-binding protein H-NS Shigella flexneri
P0ACF8 5.48e-55 171 69 0 136 1 hns DNA-binding protein H-NS Escherichia coli (strain K12)
P0ACF9 5.48e-55 171 69 0 136 3 hns DNA-binding protein H-NS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACG0 5.48e-55 171 69 0 136 3 hns DNA-binding protein H-NS Escherichia coli O157:H7
P0A1S2 1.27e-53 168 68 0 136 1 hns DNA-binding protein H-NS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A0A0H3NBY9 1.27e-53 168 68 0 136 1 hns DNA-binding protein H-NS Salmonella typhimurium (strain SL1344)
P0A1S3 1.27e-53 168 68 0 136 3 hns DNA-binding protein H-NS Salmonella typhi
A0A0F6B244 1.27e-53 168 68 0 136 1 hns DNA-binding protein H-NS Salmonella typhimurium (strain 14028s / SGSC 2262)
Q5PCT5 1.61e-52 165 67 0 136 3 hns DNA-binding protein H-NS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q9L5H8 2.52e-41 137 61 1 135 1 hns DNA-binding protein H-NS, plasmid Salmonella typhi
P57360 9.79e-39 130 51 0 135 3 hns DNA-binding protein H-NS homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P0ACG3 1.16e-36 125 55 1 135 1 stpA DNA-binding protein StpA Shigella flexneri
P0ACG1 1.16e-36 125 55 1 135 1 stpA DNA-binding protein StpA Escherichia coli (strain K12)
P0ACG2 1.16e-36 125 55 1 135 3 stpA DNA-binding protein StpA Escherichia coli O157:H7
P43841 4.07e-36 123 48 1 135 3 hns DNA-binding protein H-NS homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0A1S4 3.17e-34 119 52 2 135 3 stpA DNA-binding protein StpA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1S5 3.17e-34 119 52 2 135 3 stpA DNA-binding protein StpA Salmonella typhi

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05800
Feature type CDS
Gene hns
Product histone-like nucleoid-structuring protein H-NS
Location 1235141 - 1235551 (strand: 1)
Length 411 (nucleotides) / 136 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_270
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00816 H-NS histone C-terminal domain
PF22470 H-NS histone-like proteins, N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2916 Transcription (K) K DNA-binding protein H-NS

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03746 DNA-binding protein H-NS - -

Protein Sequence

MSESLKPFNNIRTLRAQARESTLESLEEMLEKLTSVVEERRTEESQAKAELEERTRKLEEVRQLILKQGINPEELIQSMSTGKVASKSKRAQRPAKYEYIDENGEQKTWTGQGRTPAVIKQAIESEGKSLDSFLIK

Flanking regions ( +/- flanking 50bp)

AATCTATTATTAACTACACATCAGCCAACATTTAATTTGAGACCAGAATTATGAGTGAATCTTTGAAGCCATTTAATAATATTCGTACTCTTCGCGCACAGGCCAGAGAATCTACCCTGGAAAGTCTGGAAGAAATGCTGGAGAAACTGACTTCGGTTGTTGAAGAACGCCGTACTGAAGAATCTCAGGCTAAAGCTGAACTGGAAGAGCGTACCCGTAAATTAGAAGAAGTTCGCCAGTTAATTCTCAAGCAGGGTATCAATCCTGAAGAATTAATTCAGTCAATGTCTACCGGTAAAGTTGCAAGCAAATCAAAACGTGCGCAGCGTCCGGCTAAATACGAGTACATCGATGAAAACGGCGAGCAGAAAACCTGGACAGGTCAGGGTCGCACGCCAGCTGTTATCAAACAGGCAATCGAAAGTGAAGGCAAATCTCTGGATAGTTTCTTAATCAAATAATCCGGATTTCCACACTGAAAAGCCCTTCTGCGAAGGGCTTTTTTTTGTGC