Homologs in group_2687

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05265 FBDBKF_05265 87.0 Morganella morganii S1 alpA DNA-binding transcriptional regulator AlpA
EHELCC_12325 EHELCC_12325 87.0 Morganella morganii S2 alpA DNA-binding transcriptional regulator AlpA
NLDBIP_12665 NLDBIP_12665 87.0 Morganella morganii S4 alpA DNA-binding transcriptional regulator AlpA
LHKJJB_12525 LHKJJB_12525 87.0 Morganella morganii S3 alpA DNA-binding transcriptional regulator AlpA
HKOGLL_11140 HKOGLL_11140 87.0 Morganella morganii S5 alpA DNA-binding transcriptional regulator AlpA

Distribution of the homologs in the orthogroup group_2687

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2687

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05720
Feature type CDS
Gene -
Product DNA-binding protein
Location 1215333 - 1215890 (strand: -1)
Length 558 (nucleotides) / 185 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2687
Orthogroup size 6
N. genomes 6

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3311 Transcription (K)
Mobilome: prophages, transposons (X)		 KX DNA-binding transcriptional regulator AlpA

Protein Sequence

MALYNFTLTLSGVTAETENLEDALFKSGCDDALLCFYGKSVYLEFDREALSPDAAIRSAVEDVESAGLNARVESVDSALVGLSDIAELTGMSRQAIALLKDGTRGQGNFPCPVQRLRGQSPLWDWAAVAVWLSQQGRLAAHPELAENAKTIVKWNVALRAGAAENPAEIEAITRSLLARREKCRC

Flanking regions ( +/- flanking 50bp)

GACTGAATTAATCAGGGTGGTAAATACTGCCTCCATACAAGGGAAAAAGTATGGCACTGTATAATTTTACACTAACACTTTCCGGCGTCACCGCAGAGACAGAAAATCTGGAAGATGCATTATTTAAAAGTGGTTGTGATGATGCATTACTCTGTTTTTACGGGAAATCAGTGTATCTGGAATTTGACCGCGAAGCGCTGTCCCCGGATGCCGCTATCCGCAGTGCTGTTGAGGATGTTGAATCAGCGGGGCTGAATGCCCGGGTTGAATCGGTGGATTCTGCCCTGGTCGGACTGAGTGATATTGCAGAACTGACAGGTATGTCGCGTCAGGCGATTGCGCTGCTGAAAGACGGCACGCGTGGGCAGGGTAATTTTCCGTGCCCTGTTCAGCGCCTTCGCGGGCAATCCCCGTTGTGGGACTGGGCGGCAGTCGCTGTCTGGTTGTCACAGCAGGGGCGGCTGGCGGCGCATCCGGAGCTTGCGGAGAACGCAAAAACCATCGTCAAATGGAATGTGGCGCTGCGAGCCGGTGCTGCTGAAAACCCTGCGGAAATTGAAGCGATTACACGGTCATTGCTGGCGCGCCGTGAAAAATGCCGTTGCTGAGTGTATGAGCGGGGTGCGAACCCCGCACACGACCGGGAAACAAAAAAGAC